New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4306454 =	14 (0.810)	5 (0.310)	5/280	NT	25.1%	coding (582/1137 nt)	phnM	ribophosphonate triphosphate hydrolase
	?	CP009273	4306640 =	17 (1.070)					coding (396/1137 nt)	phnM	ribophosphonate triphosphate hydrolase

CGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGT  >  CP009273/4306181‑4306728                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                   cgtcACTTTGCCGGGTTTGGAGCCGCCGCGCACAATATTCGGCGCGCCCAGCAGCACGTTCATTCCAGGCTTGCGCGAGGCTTCCACCGCTNCGAACGTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGATATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGTCGAGCGCCAGTTGCTCTTCTTCGTActgct                                                                                                                                                                                                                                                                                   <  1:239351/272‑1 (MQ=255)                                     atTCGGGGCGCCCATCAGAACGTGCAGGCCATGCTTGCGCGAGGCGTCCGCCGCGTCGAACGTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGa                                                                                                                                                                                                                                                <  1:87935/274‑1 (MQ=255)                                              gcCCATCAGCACGTTCATGCCATGCTTGCGCGAGACTTCCGCCGCTTCGAACCTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGGGACTGGCAAGCGCAATTTTTCGCGCGCTGCACAGGGCGGCGATGGATTCGCGATTCTACTGCGACCAGCGTGCGGCTACCGCCAGTTGCTCTTCGTGGGCCTGCTGCCTATGCGCCTGCGTGCGGGAGGAGTTGCTCTgctcatttag                                                                                                                                                                                                                                        >  2:87933/1‑264 (MQ=255)                                                                                              gcccactcggcgatgagcagccacgacgcgctgatggtggcgagcggcatcaccaccgtactggatgccgtggcaattggcgacgtgcgcgacggcggcgatcggctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTcc                                                                                                                                                                                       >  1:128587‑M1/181‑274 (MQ=255)                                                                                                                 gccacgacgcgctgatggtggcgagcggcatcaccaccgtactggatgccgtggcaattggcgacgtgcgcgacggcggcgatcggctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCAGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGc                                                                                                                                                                        <  1:314011‑M1/109‑1 (MQ=255)                                                                                                                 gcaagggggggctggggggggggaggggcatcaccaccggacgggatggcgtggcaattggcgacggggacgacgggggggatcggcgggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacggggcgtcaaccgcgccgagcaccgtCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCa                                                                                                                                                                    >  2:314000‑M1/162‑274 (MQ=255)                                                                                                                                       gagaTTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCAt                                                                                                                                                                                                                                                                       >  1:302075/1‑153 (MQ=255)                                                                                                                                           ttCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGt                                                                                                                                                                                                                                                                   <  2:302064/153‑1 (MQ=255)                                                                                                                                                   cgtgggcgtgggTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCt                                                                                                                                                                                                                                                                             >  2:64911/1‑135 (MQ=255)                                                                                                                                                       ggcgtgggTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTgcgc                                                                                                                                                                                                                                                                         <  1:64913/135‑1 (MQ=255)                                                                                                                                                        gcgtgggTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGa                                                                                                                                                                                                                                                             >  1:51508/1‑146 (MQ=255)                                                                                                                                                            gggtggCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTAt                                                                                                                                                                                                                                                         <  2:51507/146‑1 (MQ=255)                                                                                                                                                             ggtggCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGt                                                                                                                                                                                                                                                                   >  1:286768/1‑135 (MQ=255)                                                                                                                                                             gatgccgtggcaattggcgacgtgcgcgacggcggcgatcggctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTg                                                                                                                                                                                                                                                                            <  1:286358‑M1/9‑1 (MQ=255)                                                                                                                                                                 gCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAgt                                                                                                                                                                                                                                                               <  2:286757/135‑2 (MQ=255)                                                                                                                                                                                             cggcgatcggctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCa                                                                                                                                                                                                                                                                                <  1:96613‑M1/5‑1 (MQ=255)                                                                                                                                                                                                 gatcggctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTg                                                                                                                                                                                                                                                                            >  2:96611‑M1/82‑90 (MQ=255)                                                                                                                                                                                                  atcggctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCgg                                                                                                                                                                                                                        <  2:64183‑M1/61‑1 (MQ=255)                                                                                                                                                                                                      gctggagaatctggagaagatgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTgg                                                                                                                                                                                                                    >  1:64185‑M1/77‑141 (MQ=255)                                                                                                                                                                                                                  cgATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCgg                                                                                                                                                                                                 >  2:263586/1‑148 (MQ=255)                                                                                                                                                                                                                      ggATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAg                                                                                                                                                                                             <  1:263594/148‑1 (MQ=255)                                                                                                                                                                                                                           cgcgATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCa                                                                                                                                                  <  1:131677/186‑1 (MQ=255)                                                                                                                                                                                                                                    catcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtCTGCATCTgcgc                                                                                                                                                                                                                                                                         <  2:114735‑M1/12‑1 (MQ=255)                                                                                                                                                                                                                                                         gcgcCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTATCTTCGATGGCGTTGATCATCTtctc                            >  1:79026/1‑274 (MQ=255)                                                                                                                                                                                                                                                                             tACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGACGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATcgc        >  1:169094/1‑274 (MQ=255)                                                                                                                                                                                                                                                                              aCTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATg                                                                                              >  1:210823/1‑187 (MQ=255)                                                                                                                                                                                                                                                                                  CTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAAGTTCTCCAGCCGCACGCCGCCGt  <  1:20980‑M1/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                  CTGCAGCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGa                                                                                          >  2:210817‑M1/1‑187 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                   CGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGT  >  CP009273/4306181‑4306728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.