New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4306454 =	14 (0.810)	5 (0.310)	5/280	NT	25.1%	coding (582/1137 nt)	phnM	ribophosphonate triphosphate hydrolase
	?	CP009273	4306640 =	17 (1.070)					coding (396/1137 nt)	phnM	ribophosphonate triphosphate hydrolase

GCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTC  >  CP009273/4306429‑4306879                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                gcgcCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTATCTTCGATGGCGTTGATCATCTtctc                                                                                                                                                                                   >  1:79026/1‑274 (MQ=255)                     tACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGACGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATcgc                                                                                                                                                               >  1:169094/1‑274 (MQ=255)                          CTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAAGTTCTCCAGCCGCACGCCGCCGt                                                                                                                                                         <  1:20980‑M1/275‑1 (MQ=255)                          CTGCAGCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGa                                                                                                                                                                                                                                                 >  2:210817‑M1/1‑187 (MQ=255)                                                  gTATTTGCCCTGATAATATTCGCGATTCTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACNAGCGTCACNGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGGCGTCGCGCACGTCGCCAATTGCCACg                                                                                                                                  <  1:215813/274‑1 (MQ=255)                                                          ccTGATAATCTTCGCGATACTTCTCGCGGTTGGCGAACGGGGGCTGGCCCGGCGAGTGTTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTGCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAg                                                                                                                          <  1:153563/274‑1 (MQ=255)                                                                            aCTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACgg                                                                                                                                                                                                                                              >  1:34960/1‑140 (MQ=255)                                                                                ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCt                                                                                                                                                                                                                                          <  2:34960/140‑1 (MQ=255)                                                                                                   tgacgctggtgtcgctgatggaccactcgccgggccagcgccagttcgccaaccgcgagaagtatcgcgaatattatcagggcaaatactccctcactgatgcgcagatgcagACGGTGCTCGGCGCGGTTGACGCCCCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCCGCCGATCCCCCCCGTCGTCCCCGTCGCCAATTGCCACGCCATCCCGTCCGGTGGTGATGCCCCTCcccccccccagcccccccttgc                                                                                 >  2:314000‑M2/114‑264 (MQ=255)                                                                                                       gctggtgtcgctgatggaccactcgccgggccagcgccagttcgccaaccgcgagaagtatcgcgaatattatctgggcaaatactccctcactgatgcgcagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGgc                                                                                 <  1:314011‑M2/161‑1 (MQ=255)                                                                                                                      ggaccactcgccgggccagcgccagttcgccaaccgcgagaagtatcgcgaatattatcagggcaaatactccctcactgatgcgcagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGc                                                              >  1:128587‑M2/95‑274 (MQ=255)                                                                                                                             cGACACCAGCGTCACCGGCTCGCGCTTCACCATTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGANGCAGACGGNGCTCGGCGCGGTCGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGt                                                      <  1:219873/275‑1 (MQ=255)                                                                                                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGc                                                          <  1:62425/265‑1 (MQ=255)                                                                                                                                          aCCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACgg                                                                                                                                 >  1:184038/1‑187 (MQ=255)                                                                                                                                              gCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATc                                                                                                                             <  2:184034/187‑1 (MQ=255)                                                                                                                                                   ccaaccgcgagaagtatcgcgaatattatcagggcaaatactccctcactgatgcgcagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGc                                                                                                                                                                      >  1:64185‑M2/66‑141 (MQ=255)                                                                                                                                                       ccgcgagaagtatcgcgaatattatcagggcaaatactccctcactgatgcgcagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGAt                                                                                                                                                                  <  2:64183‑M2/80‑1 (MQ=255)                                                                                                                                                           gcgTTTGTCAAGCACCGGCGGCGTGGGGTGCTGTGGCACGGCGCAGCGCTGATGCAGACGGTGCGCGGCGCGGTTGACGTCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGCTTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTAt                        <  2:79024/273‑1 (MQ=255)                                                                                                                                                             gTTTTTCAAACAGCGGCAGCGTGTTGTGATGCGGCAGTTCGCTGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATc                       <  1:158357/274‑1 (MQ=255)                                                                                                                                                                                  tggtgTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTc  >  1:169441/1‑274 (MQ=255)                                                                                                                                                                                         aTGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACCGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTgcc                                                                                 >  2:224167/1‑186 (MQ=255)                                                                                                                                                                                            cGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAAtt                                                                                                                                        >  1:88369/1‑130 (MQ=255)                                                                                                                                                                                             ggCANTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGGTGCCGCTCGCCACCATCAGCGCGTCGTGgctgct                                                                             <  1:224173/188‑1 (MQ=255)                                                                                                                                                                                               cAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGCTGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGACCGTCGCCAATTGCCACGGCCTCCAGTACGGTGGTGATGcc                                                                                                           >  2:114345/1‑156 (MQ=255)                                                                                                                                                                                                aGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCa                                                                                                                                    <  2:88367/130‑1 (MQ=255)                                                                                                                                                                                                   tCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTc                                                                                                       <  1:114347/156‑1 (MQ=255)                                                                                                                                                                                                    cgcagcgcagATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTc                                                                                                                                                                                                        >  1:114737/1‑58 (MQ=255)                                                                                                                                                                                                       agcgcagATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACgg                                                                                                                                 >  2:286347/1‑126 (MQ=255)                                                                                                                                                                                                        gcgcagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATg                                                                                                                                                                                                    <  2:114735‑M2/46‑1 (MQ=255)                                                                                                                                                                                                           cagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATc                                                                                                                                                                 >  2:96611‑M2/10‑90 (MQ=255)                                                                                                                                                                                                           cagatgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATc                                                                                                                             <  1:286358‑M2/117‑1 (MQ=255)                                                                                                                                                                                                               tgcagACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATcgccg                                                                                                                                                             <  1:96613‑M2/85‑1 (MQ=255)                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                GCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACTTCTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCTTCTCCAGATTCTCCAGCCGATCGCCGCCGTCGCGCACGTCGCCAATTGCCACGGCATCCAGTACGGTGGTGATGCCGCTCGCCACCATCAGCGCGTCGTGGCTGCTCATCGCCGAGTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTC  >  CP009273/4306429‑4306879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.