New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4310796	22 (1.270)	5 (0.310)	4/284	NT	17.7%	coding (269/585 nt)	phnH	ribophosphonate triphosphate synthase subunit
	?	CP009273	= 4310999	26 (1.610)					coding (66/585 nt)	phnH	ribophosphonate triphosphate synthase subunit

AGGATCAGGTCGATGCCGAGCGGGAACGGATGCGGGCGCTCGGTGAGTTCGTGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGC  >  CP009273/4310538‑4311032                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             tggATCAGGTCGATGCCGGGCGGGAACGGATGCGGGCGCTCGGTGAGTTCGTGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAg                                                                                                                                                                                                                              <  1:333658/274‑1 (MQ=255)             aTGCCGAGCGGGAACGGATGCGGGCGCTCGGTGAGTTCGTGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTGGCCTGTTCCGGCTGGCTGACCGCCCGCGCGGTgg                                                                                                                                                                                                                   >  2:63751/1‑274 (MQ=255)                 cGAGCGGGAACGGATGCGGGCGCTCGGTGAGTTCGTGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAgcgg                                                                                                                                                                                                                           <  1:63753/262‑1 (MQ=255)                       ggAACGGGGGGGGGGGCTCGGTGAGTGCGTGCAGAAGGCACTCCGGCAGCGGCGGAGCGATCATTCGTTCTTAGGAAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGTTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACg                                                                                                                                                                                                         <  1:70354/274‑1 (MQ=255)                         agcGGATGCGGGCGCTCGGTGAGTTCGTGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTNGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACg                                                                                                                                                                                                         <  1:279145/270‑1 (MQ=255)                                   gcggcTGGGTGGGTTCGTGCCGAATGCACTCCGCCAGCGGCGGGGCGATCCTTCGGTCTTCGTCCATCCCCGCATCGGGAAGGCCCAACAGGCGTCCGCCGCTGAGGCTTGCGACGTGTAAAATCAGCGTCGCACCCGGTTCCGGGGCAACGGCGGTGGCGGTGGAAACGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCGGTTCCGGGTGGCTGACCAGGGGCGTGTTGGTATGAAAACGCTGGCTCTGGtt                                                                                                                                                                                             <  2:45667/271‑1 (MQ=255)                                                    tGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTaaaggccatgagcgagccgggcgtgattgtcgccctgcatcagctcaaacgcggccggcaaccgct                                                                                                                                                                            >  1:119821‑M1/1‑208 (MQ=255)                                                        gAATGCACTCCGGCAGCTGCGGGGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCTCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGCTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTaaaggccatgagcgagccgggcgtgattgtcgccctgcatcagctcaaacgcggctggcatccgctgaata                                                                                                                                                                       <  1:332253‑M1/275‑72 (MQ=255)                                                                          gCGGAGCGATCCTTCGTTCTTCGGCAATACCCGCACCACTAAGGCGCAACATGCGTCCGCCGCTCAGGCTCGCGACCTGTAAAACCACCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTacaggccatgagcgagccgggcgtgattgtcgacctgcatccgctcaaaggcggcaggcaaccgccgacaatcgccaccccccgccgcc                                                                                                                                                     >  2:102962‑M1/1‑186 (MQ=255)                                                                                             ttcGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGAGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGCCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGCCGATAGCGTTATTTAATGGGGTAGAAAGCCACACCGGCGGGGCGGTAACGGCCacgg                                                                                                                                  >  1:212237/1‑272 (MQ=255)                                                                                               cGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTTATGGGGCAGAAAGCCACACCGGAGAGTCGTTAGCGGCCAGCGTc                                                                                                                                >  1:14144/1‑275 (MQ=255)                                                                                                         cGCACCAGGAAGGCGCAACATGCGTCCGCNGCTCAGGATGGCGACCTGTAAAATCAGCGTCGCACCCGCGTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTTCGAATACGCAGGCCCTGGTTGACGATATc                                                                                                                                                                                    <  1:232060/213‑1 (MQ=255)                                                                                                                gTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGCGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGAGCGTTGGTAGGAAAACGCAGGCTCTGGTTGACGCTATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGCCATTATCGTCCAGCGTCCGCAGCAAGCtggtgga                                                                                                               >  1:168254/1‑274 (MQ=255)                                                                                                                    ggCGCCACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCg                                                                                                           <  1:79603/275‑1 (MQ=255)                                                                                                                                    cccgagcaggcggGCGACCTGTAAGACCCGCGTCGCTCCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGTCGTTGAGCTGTTCGCTGGAAAGCGCCTCATTCGTCACCGCGAAGGTCGCCGGTTaaaggccatgagcgagccgggcgtgattgtcgccctgcatcagctcaaacgcggctggcaaccgctgaatatcgccaccaccagcgtgctgctgacgctggccgataacgacacgccggtgtggctttctaccccattaaataacga                                                                                           <  2:119819‑M1/269‑148 (MQ=255)                                                                                                                                     ccgcTCAGGCTGGCGTCCTGTAAAACCAGCGTCGCACCCTCCTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTGGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGGCGCCTGTTaaaggccatgagcgagccgggcgggattgtcgacctgcatcagctcaaacgcggctggcaaccgctgaatatcgccaccaccagcgtgctgctgacgctggccgataacgacacgccggtgtggctttctaccccattaaataacga                                                                                           <  1:102964‑M1/274‑148 (MQ=255)                                                                                                                                          cAGGGTGGCGGCCTGTAAAATCAGCGTCGGACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGc                                                                                        <  1:132266/272‑1 (MQ=255)                                                                                                                                                ggCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAgcgg                                                                                                                                                                                                                           >  2:308071/1‑135 (MQ=255)                                                                                                                                                    aCCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGcgcg                                                                                                                                                                                                                       <  1:308082/135‑1 (MQ=255)                                                                                                                                                       tGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATgggg                                                                                                                                                                      >  2:154316/1‑181 (MQ=255)                                                                                                                                                           aaaTCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGa                                                                                                                                                                  <  1:154320/181‑1 (MQ=255)                                                                                                                                                                                        aCGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGGCGCACGCTGGGGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGAGGCAGGGGGACAATCACGCCGGGCTCGCCCATGGc                                       >  2:117408/1‑275 (MQ=255)                                                                                                                                                                                                         aaGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGat                                                                                                                                                                                       >  1:139410/1‑114 (MQ=255)                                                                                                                                                                                                             gCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCg                                                                                                                                                                                   <  2:139407/114‑1 (MQ=255)                                                                                                                                                                                                                        ttCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGc                                                                                                                                                                                                        >  2:177496/1‑82 (MQ=255)                                                                                                                                                                                                                            cTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGc                                                                                                                                                                                                    <  1:177500/82‑1 (MQ=255)                                                                                                                                                                                                                             tGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGc  >  1:128126/1‑275 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             AGGATCAGGTCGATGCCGAGCGGGAACGGATGCGGGCGCTCGGTGAGTTCGTGCAGAATGCACTCCGGCAGCTGCGGAGCGATCATTCGTTCTTCGGCAATACCCGCACCAGTAAGGCGCAACATGCGTCCGCCGCTCAGGCTGGCGACCTGTAAAATCAGCGTCGCACCCGCTTCCGGCGCAACGGCGGTGCCGGTGGAAAGGGCGTTGAGCTGTTCGCTGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGC  >  CP009273/4310538‑4311032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.