New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4310796	22 (1.270)	5 (0.310)	4/284	NT	17.7%	coding (269/585 nt)	phnH	ribophosphonate triphosphate synthase subunit
	?	CP009273	= 4310999	26 (1.610)					coding (66/585 nt)	phnH	ribophosphonate triphosphate synthase subunit

TGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCAGCGCGTCAATCAGCGCGCAGCGTTCGGCGTGCTGTTTATCACGCCCCTGCACCC  >  CP009273/4310758‑4311266                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                            tGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGc                                                                                                                                                                                                                                            >  1:128126/1‑275 (MQ=255)                                                                                         gACGTTTTCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAGAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGc                                                                                                                                                    <  1:117410/275‑1 (MQ=255)                                                                                          aCGGTATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGAGGCGATAGTCAGCGGTTGCCAGCCGCGTTTGAGGTGATGCAGGGCGACAATCACGCACGGCGCGCTGATGTCGTTTAACAGGCGACGAAAACTTTGATGGGCATCCTGCACGGGAAGCCTACAAGCGGTTGCCAGGGTCATGCGTCGTCTGCGCGAACCATCATAAAGACGTAGACACGGCTggatggcacgatggc                                                                                                                                                    >  2:47829/1‑261 (MQ=255)                                                                                          aCGATATCGTTATTTAATGAGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGAGGTTTACAGGGTGATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGACTGGCGTTCACTTAGGcc                                                                                                                                                   >  1:274892/1‑275 (MQ=255)                                                                                              tatCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACACTCACGCCCGGCTCGCTCATAGCCTTTAACAGGCGACGAATACTGTGCTCGGCATCCTGCa                                                                                                                                                                                                                                           >  1:166479/1‑183 (MQ=255)                                                                                                tCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGTCGACAATCCCGCCCGGCTCGCTCATGGCCTTTaacaggcgcccttcgcggtgacggatgaggcgatttccagcgaacagctccacgccctttccaccggcaccgccgttgcgccggaggagggtgcgacgctggttttacaggacgccagcctgagcgg                                                                                                                                              <  1:102964‑M2/274‑128 (MQ=255)                                                                                                tCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTaaccggcgaccttcgcggtgacgaatgaggcgctttccagcgaacagctcaacgacctttccaccggcaccgccgttgcgccggaagcgggagcgacgcgggtcttacaggtcgcccgcctgctcggg                                                                                                                                             <  2:119819‑M2/275‑129 (MQ=255)                                                                                                         aaTGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCNAGCCGCGTNTGAGCTGATGCATGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCAGGCTGGCTTTCACTTCGGCCTGGCGTGCGGCAAt                                                                                                                                     <  1:218244/274‑1 (MQ=255)                                                                                                                        cacaCCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTc                                                                                                                      >  2:97614/1‑274 (MQ=255)                                                                                                                              ggCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGc                                                                                                                                                                                                                                   >  1:188894/1‑159 (MQ=255)                                                                                                                                 gtgtCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGc                                                                                                            >  1:90866/1‑275 (MQ=255)                                                                                                                                  tgtCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATaa                                                                                                                                                                                                                               <  2:188890/159‑1 (MQ=255)                                                                                                                                           cGGCCCGCGNCCGCCGGACGTGGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATaa                                                                                                  <  2:128124/275‑1 (MQ=255)                                                                                                                                                          ggcggcgggGGGTGGCGATTGTCGGCGGTTGCCTGCCGCCTTTGAGCGGATGCAGGTCGACAATCACGCCCGGCTCGCTCATGGCCTGTaacaggcgaccttcgcggtgacggatgaggcgatttccagcgaacagctcaacgccctttccaccggcaccgccgttgcgccggaagcgggtgcgacggtggttttacaggtcgcgagcctgagcggcggacgcatgttgcgccttagtggtgcgggtattgccgaagaacgaaggatcgctccgc                                                                                   >  2:102962‑M2/5‑89 (MQ=255)                                                                                                                                                                        gCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATaaa                                                                                                                                                                                                                              >  2:279629/1‑122 (MQ=255)                                                                                                                                                                            tatTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCg                                                                                                                                                                                                                          <  1:279640/122‑1 (MQ=255)                                                                                                                                                                            tatTCAGCGGATGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTaacaggcgaccttcgcggtgacggatgaggcgatttccagcgaacagctcaacgccctttccaccggcagcgccgttgcgccggaagcgggtgcgacgctgattttacaggtcgccagcctgagaggcggacgcatgttgcgccttactggtgcgggtattgccgaagaacgaatgatcgccccgcagctgccggagtgcattc                                                                 <  1:332253‑M2/275‑205 (MQ=255)                                                                                                                                                                                 aGCGGTTGCCGGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTaacaggcgaccttcgcggtgacggatgaggcgatttccagcgaacagctcaacgccctttccaccggcaccgccgttgcgccggaagcgggtgcgacgctgattttacaggtcgccagcctgagcggcggacgcatgttgcgccttactggtgcgggtattgccgaagaacgaatgatcgctccgcagctgccggagtgcattctgca                                                             >  1:119821‑M2/1‑66 (MQ=255)                                                                                                                                                                                   cGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTGCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCAt                                                          >  1:275273/1‑275 (MQ=255)                                                                                                                                                                                        gCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGAAAAGTTTTGAAAGTGGCGAGATTGCTGCATCAgc                                                      >  1:41767/1‑274 (MQ=255)                                                                                                                                                                                                                 ggCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAACGCGCTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCATCGTCCAGCGGGGCAATACGGGTTTCTGATAAGtt                                                                                  >  2:261251/1‑221 (MQ=255)                                                                                                                                                                                                                     aCAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGt                                                                                                                                                                             >  1:15115/1‑126 (MQ=255)                                                                                                                                                                                                                     aCAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGNGTCCAGCGGGGCAATAAGGGttt                                                                                            >  1:263522/1‑207 (MQ=255)                                                                                                                                                                                                                     aCAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATtgctgc                                                            >  1:123920/1‑239 (MQ=255)                                                                                                                                                                                                                     aCAATCACGCCCGGCTCGCTCATGGACTTTAACAGGCNACGAAAACTGTGCTGGGCAGCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGCGGCAATAAGGGTTTCTGATAAGTTTTGa                                                                              <  1:261259/221‑1 (MQ=255)                                                                                                                                                                                                                      acctaccgcccgccGCGCGCAGGGCCTTTCACGGGCGACGAACCCTGTGCTGGGCCTCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGACCCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCAGCGCGTCAATCAGCGCGCAGCGTTCGGCGTGCt                       <  2:90864/269‑1 (MQ=255)                                                                                                                                                                                                                         tCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGAc                                                                                                                                                                         <  2:15115/126‑1 (MQ=255)                                                                                                                                                                                                                          cACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCAGCGCGTCAATCAGCGCGCAGCGTTCGGCGTGCTGtt                    <  1:97616/274‑1 (MQ=255)                                                                                                                                                                                                                           aCGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCcg                                                                                                                                                                                                >  1:123055/1‑101 (MQ=255)                                                                                                                                                                                                                               ccGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGaa                                                                                                                                                                                            <  2:123053/101‑1 (MQ=255)                                                                                                                                                                                                                                           tGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGACATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGGTAAGTTTTGAAAGTGGCGAGATTGCTGCATCAGCGCGTAAATCAGCGCGCAGCGTTCGGCTAGCTGTATATCACGCACCTGCaaac  >  1:77147/1‑272 (MQ=255)                                                                                                                                                                                                                                                  tAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTTCCGCAATGCGTGCCATACGCTCAGCCTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCAGCGCGTCCATCAGCGCGCAGCGTTCgg                             >  1:122897/1‑241 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                            TGGAAATCGCCTCATCCGTCACCGCGAAGGTCGCCTGTTCCGGCTGGCTGACCAGCGGCGCGTTGGTATGAAAACGCAGGCTCTGGTTGACGATATCGTTATTTAATGGGGTAGAAAGCCACACCGGCGTGTCGTTATCGGCCAGCGTCAGCAGCACGCTGGTGGTGGCGATATTCAGCGGTTGCCAGCCGCGTTTGAGCTGATGCAGGGCGACAATCACGCCCGGCTCGCTCATGGCCTTTAACAGGCGACGAAAACTGTGCTGGGCATCCTGCACGGGAAGCATAAAAGCGGTTTCCAGGGTCATGCGTTGTCTCCGCGAACCATCGTAAAGAAGTCGACCCGGCTGGCGTTCACTTCGGCCTGGCGTGCGGCAATGCGTGCCATACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAAAGTGGCGAGATTGCTGCATCAGCGCGTCAATCAGCGCGCAGCGTTCGGCGTGCTGTTTATCACGCCCCTGCACCC  >  CP009273/4310758‑4311266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.