New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4541074	26 (1.500)	4 (0.240)	4/292	NT	13.3%	coding (40/1344 nt)	gntP	fructuronate transporter
	?	CP009273	= 4541365	27 (1.620)					intergenic (‑252/‑88)	gntP/uxuA	fructuronate transporter/mannonate hydrolase

AGACCGAGACGCGCCAGCAGCGTATGCGCTATCTGGTGAGCCGCGCCGGAGTCGACCATCAATTTACCGATGACCGCACCGAACACCACGATGATAGCCAGTTCCCCCAGCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTC  >  CP009273/4540824‑4541342                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                             aGACCGAGACGCGCCAGCAGCGTATGCGCTATCTGGTGAGCCGCGCCGGAGTCGACCATCAATTTACCGATGACCGCACCGAACACCACGATGATAGCCAGTTCCCCCAGCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATNAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACAACCCaaag                                                                                                                                                                                                                                                         >  1:279246/1‑272 (MQ=255)         cggcgcCAGCACCGTATGCGCTACCTGGTGAGCCGCGCCGGAGTCGACCAGCAATTGACCGAGTACCGCACCGAACACCACGATGATAGCCAGTTCCCCCAGCGTGTGTCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGca                                                                                                                                                                                                                                              <  2:279235/273‑1 (MQ=255)                                          cgcgCCGGAGTCGACCATCAATTTACCGATGACCGCACCGAACACCACGATGATAGCCAGTTCCCCCAGCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGACACCAACAAAGCCACCATCGAATTGATTTTGAACTTCAAATTCAGTACCAGCATTAGACCgcagcagtggcctttcatcggagaaggtggcgtaaaaatctttcctttttgtaaaacatgtcacc                                                                                                                                                                                                             >  2:317703‑M1/1‑210 (MQ=255)                                                                                                 gCCAGTTCCCCCATCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCATCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATATTGAACTTCAAATTCAGTACCAGCATCAGACCgcagccgtggcgttgcatcggatgagatggcgtataagttctaccttttggtaagacatgtcaacccgaattatgaaattggttaaccacatcacaagaatttcactctcatggttgttg                                                                                                                                                      <  1:317714‑M1/275‑121 (MQ=255)                                                                                                      ttCCCCCAGCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTttac                                                                                                                                                                                                                             >  2:316341/1‑199 (MQ=255)                                                                                                          cccAGCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTttacctta                                                                                                                                                                                                                         <  1:316352/199‑1 (MQ=255)                                                                                                                                         tttgCAGCAGCGACATCGAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATGTTGAACTTCAAATTCAGTACCAGCATCACAGCAATGCCGAATACAACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTAACTGGTTGAACCGTTGTTCTTTTGTACCATATGTGATGTAAATTTGTCAACCATTGGTTCGATTAATGTCCAATACTCTGATCAATAACCATCGATATCCCTTtgc                                                                                                               >  2:119648/3‑274 (MQ=255)                                                                                                                                         tgtgCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCgcagccgtggcgttgcatcggatgagatggcgtataagttctaccttttggtaagacatgtcaacccgaattctgaaattggttaaccacatcacaagaatttcactctcatggttgttgctgcaaattgcagcaaagggtaatcgatggttattgatc                                                                                                               >  1:114342‑M1/1‑115 (MQ=255)                                                                                                                                           tgCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCACTGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCAttgt                                                                                                                                                                >  2:248770/1‑223 (MQ=255)                                                                                                                                           tgCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGtt                                                                                                                                                                                                                                                   >  1:1171/1‑140 (MQ=255)                                                                                                                                               gcagcGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCACTGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCg                                                                                                                                                            <  1:248778/223‑1 (MQ=255)                                                                                                                                               gcagcGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGc                                                                                                                                                                                                                                               <  2:1171/140‑1 (MQ=255)                                                                                                                                                cagcGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTttac                                                                                                                                                                                                                             >  1:60773/1‑157 (MQ=255)                                                                                                                                                   cGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCg                                                                                                                                                                                                                                                                       >  2:246233/1‑112 (MQ=255)                                                                                                                                                    gACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTttacctta                                                                                                                                                                                                                         <  2:60771/157‑1 (MQ=255)                                                                                                                                                       aTCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATa                                                                                                                                                                                                                                                                   <  1:246241/112‑1 (MQ=255)                                                                                                                                                        tCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCgcagccgtggcgttgcatcggatgagatggcgtataagttctaccttttggtaagacatgtcaacccgaattctgaaattggttaaccacatcacaagaatttcactctcattgttgttgctgcaaattgcagcaaagggtaatcgatggttattgatcagaggatgtgacatt                                                                                                <  2:114340‑M1/274‑175 (MQ=255)                                                                                                                                                                  gCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGa                                                                                                                                                                                                                                                                      >  1:308695/1‑98 (MQ=255)                                                                                                                                                                      gCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATac                                                                                                                                                                                                                                                                  <  2:308684/98‑1 (MQ=255)                                                                                                                                                                                                              ccaTTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTACCAAATTTCAGAATTCggtt                                          >  2:140648/1‑272 (MQ=255)                                                                                                                                                                                                                 ttgaattgaTTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGAc                                      <  1:140651/275‑1 (MQ=255)                                                                                                                                                                                                                  ttaattgaTTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGTGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGTTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTTGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACa                                     <  1:119650/273‑1 (MQ=255)                                                                                                                                                                                                                           tttGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAAt                                                                                                                                   >  1:134469/1‑172 (MQ=255)                                                                                                                                                                                                                              gAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTa                                                                                                                                                                                                                                                  >  1:244250/1‑58 (MQ=255)                                                                                                                                                                                                                               aaCTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAAcc                                                                                                                               <  2:134467/172‑1 (MQ=255)                                                                                                                                                                                                                                  ttCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGca                                                                                                                                                                                                                                              <  2:244242/58‑1 (MQ=255)                                                                                                                                                                                                                                              aaaaacATCAGAAAAATGCCGAATACCACCCTGTGAATTTTTAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACg         <  2:285830/270‑1 (MQ=255)                                                                                                                                                                                                                                                  gCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAAcc                                                                                                                                                                                                             >  1:37760/1‑75 (MQ=255)                                                                                                                                                                                                                                                     tCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATNGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCAtctc  >  1:285841/1‑275 (MQ=255)                                                                                                                                                                                                                                                      cAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCgttg                                                                                                                                                                                                         <  2:37760/75‑1 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                             AGACCGAGACGCGCCAGCAGCGTATGCGCTATCTGGTGAGCCGCGCCGGAGTCGACCATCAATTTACCGATGACCGCACCGAACACCACGATGATAGCCAGTTCCCCCAGCGTGTTGCCGAAGCCCGCTTTCATAGTGTGCAGCAGCGACATCAAATCCATGCCCGCCAGCATCCCGACGGACAGCGCCGCCACCAACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTC  >  CP009273/4540824‑4541342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.