New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4541074	26 (1.500)	4 (0.240)	4/292	NT	13.3%	coding (40/1344 nt)	gntP	fructuronate transporter
	?	CP009273	= 4541365	27 (1.620)					intergenic (‑252/‑88)	gntP/uxuA	fructuronate transporter/mannonate hydrolase

GCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGT  >  CP009273/4541110‑4541630                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                          gCATAACGTTTTACTTGACCTGGTTGAATCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTTTGATGTGGTTAACCAATTTCANAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACTGCTGCGGTCTGGTTGTTCATCCg                                                                                                                                                                                                                                                         >  1:244764/1‑274 (MQ=255)                                             cGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGAAACGCAACGGCTGCGGTCTGGTTGTTCATCAGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGCAc                                                                                                                                                                                                            >  2:73713/1‑275 (MQ=255)                                              gtaatgttatgaAAATTGGTCCACCATTTTTGCGTTGAATGGTCTAGCGTATTATTATTAATCATTGTTTACCTTTTGCTGCAATTTTCATGTACAACCTTGAGAATGAAATTCCTTTGATGTGGTTATCCAATGTCAGAATTCGGGTTGACATGTCTGACCAAAAGGTATAAATTATACGTCATCTCATCCGATGCAACGCTACGGCTGCGGTCTTGTTGTTCATCCGGATACCTAAACAACGCCAGGGTCCCGCTTCTCTTTGCTGTGGAAcc                                                                                                                                                                                                           <  2:337286/272‑1 (MQ=255)                                                          aaaTTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATa                                                                                                                                                                                                                                                     >  1:9135/1‑221 (MQ=255)                                                              tGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTa                                                                                                                                                                                                                                                 <  2:9135/221‑1 (MQ=255)                                                                                   aaTGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACAATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCggtctgatgctggtactgaatttgaagttcaaaatcaattcaatggtggctttgttggtggcggcgctgtccgtcgggatgctggcgggcatggatttga                                                                                                                                                                       <  2:114340‑M2/274‑101 (MQ=255)                                                                                                  gATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCggtctgatgctggtactgaatttgaagttcaaaatcaattcaatggtggctttgttggtggcggcgctgtccgtcgggatgctggcgggcatggatttgatgtcgctgctgcaca                                                                                                                                                        >  1:114342‑M2/1‑159 (MQ=255)                                                                                                        tAACCAGCTATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATAcc                                                                                                                                                                                                                                                   >  2:197073/1‑177 (MQ=255)                                                                                                            cATCTATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTaaa                                                                                                                                                                                                                                               <  1:197078/177‑1 (MQ=255)                                                                                                             aTCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGATGGTACGGCCCAAACGATCCgg                                                                                                                                            >  1:200558/1‑275 (MQ=255)                                                                                                                         ttGCTGCAATTTGCAGCAACAACCATGAGAGTGAAAGTCTTGTGATGTGGTTAACCAATTTAAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTTTTCATCCTGATACCTAaacaa                                                                                                                                                                                                                                            >  1:162270/1‑167 (MQ=255)                                                                                                                                         caacaaCCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCATAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCggtctgatgctggtactgaatttgaagttcaatatcaattcaatggtggctttgttggtggcggcgctgtccgtcgggatgatggcgggcatggatttgatgtcgctgctgcacactatgaaagcgggcttcggcaacacgatgggggaactggc                                                                                                                <  1:317714‑M2/275‑156 (MQ=255)                                                                                                                                                                                    ttCAGAATTCGGGTTGACATGTCTTATCAAAAGGGAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAAGAGACCTGGCGCTNGTACGGCCNAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACAATATCCCGaaag                                                                       >  1:219818/1‑271 (MQ=255)                                                                                                                                                                                            gtgggTTGGAATGCNATACCAAAACGTAGAACTGATACGCCATATCATCCGATTCAAAGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAACCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATg                                                             <  2:244756/273‑1 (MQ=255)                                                                                                                                                                                                ggtgaCATGTTTTACAAAAAGGAAAGATTTTTACGCCACCTTCTCCGATGAAAGGCCACTGCTGCggtctaatgctggtactgaatttgaagttcaaaatcaattcgatggtggctttgttggtgtcggcgctgtccgtcgggatgctggcgggcatggatttgatgtcgctgctgcacactatgaaagcgggcttcggcaacacgctgggggaactggctatcatcgtggtgttcggtgcggtcatcggtaaattgatggtcgactccggcgcg                                                         >  2:317703‑M2/3‑65 (MQ=255)                                                                                                                                                                                                                   aGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTa                                                                                                                                                             >  1:231349/1‑156 (MQ=255)                                                                                                                                                                                                                       aGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTGTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTa                                                                                                                                                             <  2:76576/152‑1 (MQ=255)                                                                                                                                                                                                                       aGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGc                                                                                                                                                         <  2:231342/156‑1 (MQ=255)                                                                                                                                                                                                                                   ccATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTgg                                                                                                                                                                                                               >  2:82527/1‑90 (MQ=255)                                                                                                                                                                                                                                      tctcATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGCCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCAGAACGGCTAAGGAAGGTCGGTTGAAGAGACCCTCAACCGCAACACAACCATTGac                     >  2:233388/1‑272 (MQ=255)                                                                                                                                                                                                                                      tctcATCCGATGCAACGCCACGGCCGCGCGCTGGTTGTTCa                                                                                                                                                                                                                                                             >  1:236623/1‑41 (MQ=255)                                                                                                                                                                                                                                       ctcATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAAcc                                                                                                                                                                                                           <  1:82529/90‑1 (MQ=255)                                                                                                                                                                                                                                       ctcATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCAGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGCAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGAGCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCAACATATCCCGAACGGCGAAGGATGGTCCGTTGAAGAGATCCTCAAACGCCAGCCGATCCATGAAgcc                  >  1:33479/1‑273 (MQ=255)                                                                                                                                                                                                                                          aTCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCg                                                                                                                                                                                                                                                         <  2:236616/41‑1 (MQ=255)                                                                                                                                                                                                                                              gATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTaa                                                                                                                                                                                                                                                >  2:33596/1‑46 (MQ=255)                                                                                                                                                                                                                                                tGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGt                                                                                                                                                                                                                                   >  2:244358/1‑57 (MQ=255)                                                                                                                                                                                                                                                tGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAagag                                                                                                                                                                                            >  1:180055/1‑96 (MQ=255)                                                                                                                                                                                                                                                  cAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAaacaa                                                                                                                                                                                                                                            <  1:33596/46‑1 (MQ=255)                                                                                                                                                                                                                                                    aCGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCcg                                                                                                                                                                                                                               <  1:244366/57‑1 (MQ=255)                                                                                                                                                                                                                                                    aCGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGaaa                                                                                                                                                                                        <  2:180051/96‑1 (MQ=255)                                                                                                                                                                                                                                                       ccACGGCTGCGGTCTGGTTGTTCCTCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGAGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt  <  1:73715/275‑1 (MQ=255)                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                          GCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAACCAATTTCAGAATTCGGGTTGACATGTCTTACCAAAAGGTAGAACTTATACGCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGT  >  CP009273/4541110‑4541630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.