New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4604073	22 (1.330)	3 (0.180)	3/290	NT	12.0%	coding (776/780 nt)	yjjV	putative DNase
	?	CP009273	= 4604461	NA (NA)					noncoding (388/388 nt)	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences

GGGCTACAAAATTGGCGTAGGCGGTACTATCACCTATCCACGCGCCAGTAAAACCCGCGATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCG  >  CP009273/4603813‑4604345                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                 gtgttACTAATTTGGCGTAGGCGTTATTCTCACCTATCCACCCGCCAGTAACACCCGCGATGTCATCGCAAAATGACCGCGGGTATCGTTATTGCTGGACACCGACGCGCCGGATATGCCGCTCAACGTTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCTTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATaa                                                                                                                                                                                                                                                                     <  1:23755/270‑1 (MQ=255)  ggCTACAAAATTGGCGTAGGCGGTACTATCACCTATCCACGCGCCAGTAAAACCCGCGATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAGACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAgg                                                                                                                                                                                                                                                                   <  1:212917/275‑1 (MQ=255)                                  cTATCCACGCGCCAGTAAAACCCGCGATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCAGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGCAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGcaca                                                                                                                                                                                                                                    <  1:318588/274‑1 (MQ=255)                                   tATCCACGCGCCAGTAAAACCCGCGATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGTTGAGATTGCGCAAGCGTTGCTTAATAACTCGTATACGGTGTTTAACGGGCCGTAGGCCGGATAAGGCGTTCACGCCGCACCCGGCCGTTgtgg                                                                                                                                                                                                                                        >  2:318577/1‑266 (MQ=255)                                            gcCAGTAAAACCCGCGATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACCCGTATACGCTGTTTAACTTGCCGTAGGCCGGATCAGGCGTTCCCGCCGCATCCGGCCGTTGGCCGCCAATGccctcttc                                                                                                                                                                                                                         >  2:317331/1‑269 (MQ=255)                                                          cgATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCGTTGGCGCACAATGCCTGATGCGACGCTTAAcgcg                                                                                                                                                                                                            >  1:162110/1‑274 (MQ=255)                                                                                                            cgcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGa                                                                                                                                                                                                                            >  2:57795/1‑208 (MQ=255)                                                                                                                ggATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCg                                                                                                                                                                                                                        <  1:57797/208‑1 (MQ=255)                                                                                                                          accAACGGTTTGCANGGGGAGCCGAGTAGCCCGGGGCGGGCTGGCCGTGGGTGCGCCGGGGTTGGGGAGATGCGCCGGGAGGCGGCGGAGGAGAGTGCGCAAGCGTGGCGTAATAACACGTATACGTTGTTTAACGTGCAGTAGGCCGGATAAGGCGTTCACGCGGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCAGCATCCGGc                                                                                                                                           <  2:242834/273‑1 (MQ=18)                                                                                                                                                                             ttCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGCTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGACAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTa                                                                                         <  1:317342/274‑1 (MQ=255)                                                                                                                                                                                   gTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCgtaggcctgataagacgcgtcaagcgtcgcatcaggcattgtgcgcca                                                                                                                                                                                                                                  <  1:101433‑M1/131‑49 (MQ=255)                                                                                                                                                                                         tGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTGAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTAGCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGATCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGGCTTATCATGCCTACAAGTCTTTGCCg                                                                            >  1:318843/1‑275 (MQ=255)                                                                                                                                                                                                  cgcCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGgc                                                                                                                                                                                                                                         >  1:249012/1‑109 (MQ=255)                                                                                                                                                                                                    ccGGGAACCGGCGGATGAGATTGCGCAATCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGCACCGTAGGCCGGATAAGGGNTTCACGCCGCATCCGGCAGTTGGCGca                                                                                                                                 >  1:257966/1‑211 (MQ=255)                                                                                                                                                                                                      gggAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGcac                                                                                                                                                                                                                                     <  2:249004/109‑1 (MQ=255)                                                                                                                                                                                                        gAACCGGCGGATGAGATTGGGCAAGCGTTGCTTAATAACACGTATACGGTGTGTAACGTGCCGTAGGCCGGATAAGGCGTGCCGGCCGCATCCGGCAGTTGGCGTAAAATGCATGAGGCGACGGTGAACGCGGTTTATCATGCCTACAGGTTTGTGGCGAACCGTAGGAAGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAAt                                                                                                                             <  2:257958/211‑1 (MQ=18)                                                                                                                                                                                                                                               acGTATACGTTGTTTAACGTGCCgtaggcctgataagacgcgtcaagcgtcgcatcaggcattgtgcgccaactgccgg                                                                                                                                                                                                                          >  1:144370‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                                cGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGAAGCTTGTCGCGTCTTATCATGCCTACACGTCTGTGCCGAACCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAGGCGGCGCATAAAGcc                     >  1:162592/1‑275 (MQ=255)                                                                                                                                                                                                                                                cGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGCTGGCGCACAATGCCTGATGCGACNCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCg                                                                            >  1:255907/1‑220 (MQ=255)                                                                                                                                                                                                                                                   ataCGTTGTTTAACGTGCCgtaggcctgataagacgcgtcaagcgtcgcatcaggcattgtgcgccaactgccggatgc                                                                                                                                                                                                                      <  2:144367‑M1/79‑61 (MQ=255)                                                                                                                                                                                                                                                         tgttTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTtgt                                                                                                                                                                                     >  1:52379/1‑106 (MQ=255)                                                                                                                                                                                                                                                         tgttTAACGTGCCGTAGGCAGGATAAGGCGTTCACGCCGCATc                                                                                                                                                                                                                                                    >  1:268803/1‑43 (MQ=255)                                                                                                                                                                                                                                                             tAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                                                                                                                                                                                <  2:268793/43‑1 (MQ=255)                                                                                                                                                                                                                                                             tAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCg                                                                                                                                                                                 <  2:52377/106‑1 (MQ=255)                                                                                                                                                                                                                                                                cGTGCGGGAGGCCGGAGAAGGCGTTCACGCCGCAGCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTc     <  1:89737/275‑1 (MQ=255)                                                                                                                                                                                                                                                                     cGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGACGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATTCCTCCCAGTCTGTTCCCAACCGTAGTCCAGACAACGCGTACCCGCCGAATCCCGAAGACGGCGCAACACGCCCGACGCGGCCCCTGTcgag  >  2:89735/1‑271 (MQ=14)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                 GGGCTACAAAATTGGCGTAGGCGGTACTATCACCTATCCACGCGCCAGTAAAACCCGCGATGTCATCGCAAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCG  >  CP009273/4603813‑4604345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.