New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4604073	22 (1.330)	3 (0.180)	3/290	NT	12.0%	coding (776/780 nt)	yjjV	putative DNase
	?	CP009273	= 4604461	NA (NA)					noncoding (388/388 nt)	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences

TACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCATCAGCCAACGGCTCAACGTCTTCCGGCGTGGCGCTCGCCCAGCTTTGCGCCTCGCCATACACGCCGTGGGCATGAAACGCGTTCAGGCGTACCGGAACATCGCCGAGTCCCTTGATAAACGCCGCCAGT  >  CP009273/4604257‑4604680                                                                                                                                                                                                             |                                                                                                                                                                                                                            tactgggctttgCGGAACGGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGGTTGTGCCGAACCGTAGGCCGGATAAGGCGTCCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCGTGACGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTc                                                                                                                                                        <  1:187596/264‑1 (MQ=17)                     tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTACCCGGCAAGGCACAAATAAAACGCCGGAAATATCAAACGGCAAACCCCGCCCACCTTTAACGCa                                                                                                                                   >  1:6679/1‑275 (MQ=255)                                 ggCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATCCGACGATTGTCGCGTCTTATCATGCCTACAGGTTTGGGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCAGCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGc                                                                                                                                                                                                       <  1:299489/195‑1 (MQ=255)                                                                        gATGCGACGCTTTTCGTGTCTTATTATGCCTACTGGTTTGTGCCTAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCAGGNAGTTGGCGNACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCATCAGCCAACGGCTCAAAGTCTTCCGGCGTGGCGCTCGCCCAGCTTTGCGcc                                                                                <  1:223932/275‑1 (MQ=255)                                                                                                    cctgttggttgcggCCGAGCCGTGGGCTGGTGAAGGCGTCCGCGCCGCCTCCGGTCGGTGTCGCAGAATGGCTGATTCTGCTTTTGAGCCGTGTCATCATCACTACAAGGTTGAGCCCGACCGTTGGCCCTCTCCGGGCTGTCACCAATACAGCGCCGGATATATCAGCCGTCTCACCCCGCGCACCTTTAACGCATCAGCCAACGGCTCAACGTCTTCCGGCGTGGCGCTCGCCCAGCTTTGCGCCTCGCCATACACGCCGTGGGCATGAAAcg                                                    <  2:6679/262‑1 (MQ=255)                                                                                                              tgtgCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCAACAGCCAACGGCTCAACGTCTTCCGGCGTGGCGCCCGCCCAGCTTTTCGCCCCGCCATACACGCCGCGGGCTTGCAACGCGTTccgcg                                           >  2:134998/1‑270 (MQ=255)                                                                                                                     aaCCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATc                                                                                                                                                                                                 >  1:319771/1‑117 (MQ=255)                                                                                                                         gTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGc                                                                                                                                                                                             <  2:319760/117‑1 (MQ=255)                                                                                                                                           tCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCg                                                                                                                                                                                               >  2:91791/1‑97 (MQ=255)                                                                                                                                               gccgcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCAt                                                                                                                                                                                           <  1:91793/97‑1 (MQ=255)                                                                                                                                                  gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACggcacgttaaacaacgtat                                                                                                                                                                                                          <  2:144367‑M2/79‑20 (MQ=255)                                                                                                                                                  gcATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCATCAg                                                                                                                               >  2:132948/1‑154 (MQ=255)                                                                                                                                                      ccGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACggcacgttaaacaacgtatacgt                                                                                                                                                                                                      >  1:144370‑M2/1‑56 (MQ=255)                                                                                                                                                      ccGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCATCAGCCaa                                                                                                                           <  1:132950/154‑1 (MQ=255)                                                                                                                                                              tGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACggcacgttaaacaacgtatacgtgttattaagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcac                                                                                                                                          <  1:101433‑M2/131‑84 (MQ=255)                                                                                                                                                                              aTGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCAGTATc                                                                                                                                                                                                 >  1:83298/1‑60 (MQ=255)                                                                                                                                                                                 cGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCATCAGCCAACGGCTCAACGTCTTCCGGCGTGGCGCTCGCCCAGCTTTGCGCCTCGCCATACACGCCGTGGGCATGAAACGCGTTCAGGCGTACCGGAACATCGCCGAGTCCCTTGATAAACGCCGCCAGt  <  1:28825/248‑1 (MQ=255)                                                                                                                                                                                                             |                                                                                                                                                                                                                            TACAAGTCTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACAAGTCTGTGCCGAACCGTAGGCCGTATCCGGCATGTCACAAATAGAGCGCCGGAAATATCAACCGGCTCACCCCGCGCACCTTTAACGCATCAGCCAACGGCTCAACGTCTTCCGGCGTGGCGCTCGCCCAGCTTTGCGCCTCGCCATACACGCCGTGGGCATGAAACGCGTTCAGGCGTACCGGAACATCGCCGAGTCCCTTGATAAACGCCGCCAGT  >  CP009273/4604257‑4604680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.