New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4143640 =	20 (1.160)	4 (0.240)	4/290	NT	19.5%	coding (1136/1152 nt)	argE	acetylornithine deacetylase
	?	CP009273	4143797 =	14 (0.850)					coding (979/1152 nt)	argE	acetylornithine deacetylase

GGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGAGCCAATGCATCGTTGAGCAAACCATTAAGTTCATTGAGTGTCATGCCAGGCAGCGGACGAATATCCATATGCAACTCACAGCAAGCGCAAAT  >  CP009273/4143653‑4144019                                                                                                                                                 |                                                                                                                                                                                                                               gggTTATCAGTTCGCGGGTGGGCTGGATAGACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAAAGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTtc                                                                                                                                                                                                       >  1:235151/1‑170 (MQ=255)                    gggCTTTATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGATCCAGGCCCCAACACCAGCGTCTGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGAGCCAATGCATCGTTGAGCa                                                                           <  1:213951/275‑1 (MQ=255)                                     tttCCAGATATTCATGAGGTTGACGAGCATGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCgg                                                                                                                                                                          >  1:227691/1‑163 (MQ=255)                                         cAGATAGTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCACCAAAACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTggg                                                                                                                                                                      <  2:227685/163‑1 (MQ=255)                                                   ctggctcaattaatcaggctcatcaacctgatgaatatctggaaacacggtttatcaagcccacccgcgaactgataacccaggtaattcaccaCTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGGTCGCTCACCGGAGCCAATGCATCGTTGCGCCACCCATTAACTTGATTGAGTTGCCTGCcac                                             >  2:133477‑M2/95‑273 (MQ=255)                                                       gTTGATTAGCCTGATTCATTGAGCCAGGACCCAACACCAGCGTCTGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTAGGTGGGCATTCATAGCCAGGGCTCGGCGGATGCAGCCCGTNGACCGTCAGACGACCCGGACAGCGTTCGCGTCCCGGAGCCAAGTCACCGTTGCGCAAACCAATACATTCATTGAGTGTAATGCAAGGCAGc                                        >  1:241756/1‑275 (MQ=255)                                                       gTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGAGCCAATGCATCGTTGAGCAAACCATTAAGTTCATTGAGTGTCATGACAGGCAg                                         >  1:3336/1‑274 (MQ=255)                                                                tcaggctcatcaacctgatgaatatctggaaacacggtttatcaagcccacccgcgaactgataacccaggtaattcaccaCTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCAAGGGATCGGCGGATGCAGCtcgtcg                                                                                                                                  >  2:227557‑M2/82‑176 (MQ=255)                                                                 cTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTc                                                                                                                                                                 >  2:166459/1‑144 (MQ=255)                                                                    gctcatcaacctgatgaatatctggaaacacggtttatcaagcccacccgcgaactgataacccaggtaattcaccaCTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCCGGGATCGGCGGATGCAGCTCGTCGACCg                                                                                                                              <  1:227563‑M2/99‑1 (MQ=255)                                                                    aTTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCa                                                                                                                                                                                                >  1:169870/1‑110 (MQ=255)                                                                     ttAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAg                                                                                                                                                             <  1:166463/144‑1 (MQ=255)                                                                        aTTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTc                                                                                                                                                                                            <  2:169866/110‑1 (MQ=255)                                                                                            cAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTggg                                                                                                                                                                      >  2:107954/1‑112 (MQ=255)                                                                                             aaacacgctttatcacgcccacccgcgaactgataacccaggtaattcaccaCTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGAGCCAATGCATCGTTGAGCAAACCATTAAGTTCATTGAGTGTCATGCCAGGCAGCGGACGAATATCCATATGCAACTCACAGCAAGCGCAAAt  <  1:133479‑M2/223‑1 (MQ=255)                                                                                                gTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCAtt                                                                                                                                                                  <  1:107956/112‑1 (MQ=255)                                                                                                                           gcTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCg                                                                                                                                                                                                                >  1:138101/1‑39 (MQ=255)                                                                                                                               cGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCa                                                                                                                                                                                                            <  2:138098/39‑1 (MQ=255)                                                                                                                                                 cTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAAc                                                                                                                                                                                         >  1:181600/1‑40 (MQ=255)                                                                                                                                                 cTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGGGCCACTGCAACGTTGAGCAAACCATTAAGTTCATTGAGTGTCATGCCa                                              >  2:305229/1‑179 (MQ=255)                                                                                                                                                 cTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGAGCCAATGCATCGTTGAGCAAACCATTAAGTTCATTGAGTGTCATGCCAGGCAGCGGACGAATATCCATATGCAACTCACAGCa           >  1:192191/1‑214 (MQ=255)                                                                                                                                                 |                                                                                                                                                                                                                               GGGTTATCAGTTCGCGGGTGGGCTTGATAAACCGTGTTTCCAGATATTCATCAGGTTGATGAGCCTGATTAATTGAGCCAGGCCCCAACACCAGCGTCGGGCATAACGTTTGAATAAACGGCGCTTCGGTACAGTAGTTCACCACTTCGGTTTTTGCTCCGAGCAATTTCTCAACCACTTCAACCAGTTGATGATTCGGTGGGCATTCATAGCCAGGGATCGGCGGATGCAGCTCGTCGACCGTCAGACGACCCGGCCAGCGTTCGCTCACCGGAGCCAATGCATCGTTGAGCAAACCATTAAGTTCATTGAGTGTCATGCCAGGCAGCGGACGAATATCCATATGCAACTCACAGCAAGCGCAAAT  >  CP009273/4143653‑4144019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.