| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4368615 = | 16 (0.920) | 4 (0.250) | 3/284 | NT | 20.5% | coding (147/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| ? | CP009273 | 4368733 = | 16 (0.990) | coding (29/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak | |||||
CGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGAC > CP009273/4368540‑4368993 | cGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATATACAtt > 1:5251/1‑275 (MQ=255) tctTTTTGGCAATGTCCGCACAGCCCCAGTTAAAGTTATAAGTTTTACCCTTATCCATTTCCGCCGCCGCCATACCCGTGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGTTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTaa < 2:5251/274‑1 (MQ=255) tACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAATTGTTGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAAAATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCTATGCGTTAGATCTTAACGACACCACTCAGCGAGACAACTGTCCGTATACCAGCCCGACCga > 2:21717/1‑274 (MQ=255) ctctATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGCTTGTAACGACACCAATCAGCGTGACAACTGTCAGGCTAGCAGACAGAAAGTAGAACACCCATTTGCACGCAGGTCCGTGGACTCTCAGAACGTGCAt > 1:170659/1‑275 (MQ=255) ctATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATa > 2:121433/1‑110 (MQ=255) aaGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGt < 1:121435/110‑1 (MQ=255) gTAGTTGTGTGATGCACAATATCGTTGATTGGTTGAGGGGCAGCAAATGTTGGGCAAGAGGCGGTAATTAATAAGTCGCAGAGGGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATa < 1:21717/275‑1 (MQ=255) tAATTTTGCGAGTCATAATATTGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATa < 1:166650/274‑1 (MQ=255) cGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAAc > 2:37290/1‑112 (MQ=255) gCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGcc < 1:37290/112‑1 (MQ=255) tatagtgaaaaaaaagatcacgggtatggcggtggcggtaattAATAAGGCGCAGAGcgt > 2:122764‑M2/44‑60 (MQ=255) tatagagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTg > 2:203553‑M2/44‑80 (MQ=255) ttgttgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCag > 2:261637/1‑52 (MQ=255) gagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGTGTCGtt < 1:122766‑M2/21‑1 (MQ=255) gagcaacaaaagatcccgggtatggcggtggcggtaattAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGttt < 1:203559‑M2/41‑1 (MQ=255) tgAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGcg < 1:261645/52‑1 (MQ=255) gggCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGAt > 2:274796/1‑120 (MQ=255) agcaAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGt < 1:274807/120‑1 (MQ=255) gcaAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCATAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcaggaac > 1:141819/1‑275 (MQ=255) gCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGAtt > 1:289982/1‑114 (MQ=255) aaGAGGGGGTAAATAATAAGGCCCAGACGGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCACGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCATAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGAc < 2:141816/275‑1 (MQ=255) gagGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTaa < 2:289971/114‑1 (MQ=255) | CGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCCTGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAGGGGCAGCAAATGTGGAGCAAGAGGCGGTAATTAATAAGGCGCAGAGCGTCGTTTTGAACATAGGGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGAC > CP009273/4368540‑4368993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |