New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	13 (0.380)	28 (0.820)	24/324	0.4	49.1%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	45 (1.310)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

TTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCG  >  CP009273/359840‑360364                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                     gttgaagagaggcGCCACGGCTGGAAGGCGCTGCTGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc                                                                                                                                                                                                                                                             <  2:551551/262‑1 (MQ=255) gccagcggcttaccaaccagctcgaccattcagtgcaggagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagngttcaccgacaaacaaccgataaaacgaaaggcccagtctatcgactgagcctttcggtttatttgattcatggagaagtAATTcctgcca                                                                                                                                                                                                                                                            <  1:481586‑M1/11‑4 (MQ=255)      cGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCAGGCAGttt                                                                                                                                                                                                                                                        >  1:56031/1‑274 (MQ=255)                                    caggagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgccaaacaacagataaaacgaaaagcccagtctttcgactgagcctttagttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGAGGGCGTCCTTCCCGCCACACTCCggg                                                                                                                                                                                                                         <  1:430713‑M1/46‑1 (MQ=255)                                            ccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAATTTATGGCGGGCCTCCCTCCCGCCACCCTCCGGGCCGCTGc                                                                                                                                                                                                                  <  1:104985‑M1/53‑1 (MQ=255)                                                                         acggggcgtcatgtgCGCCAGTGTTGCCCGGCGCGCTCCGCCTGCGGTTGTTCAGGCTGTTCAATCATTTGTTTGCCTTGTGGAGCGACATCCATGGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCGCCATCCAGTGCAGGAGCTCCGATGAGAGGCTGGCAAACATGAGAATTCCGATCCCCAGTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggcgg                                                                                                                                                                                     <  2:194054/263‑1 (MQ=37)                                                                                                ttGCCCGGCGTTCTCCGCCTGCGGTCATTCAGGCAGTTCAATCTACTGTTTCCCTTGGGGAGCGACATCCAGAGGCACTTCCCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATGCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt                                                                                                                                                             <  2:56030/275‑1 (MQ=255)                                                                                                                                                           gAGCGACATCCAGAGTCACTTCACCGCTTGCCAGCGGCTTACCATCCAGNGCCACAATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa                                                                                                                                                                           <  1:577811/202‑1 (MQ=255)                                                                                                                                                               ggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt                                                                                                                                                                                                                                                                   <  2:34141‑M1/4‑1 (MQ=255)                                                                                                                                                                   gatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg                                                                                                                                                                                                                                                               >  1:34142‑M1/103‑110 (MQ=255)                                                                                                                                                                           cACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCGCGAGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAAAGCAAAGCCCCATCTTTAGACTCACCCTTTCGTTTTCTTTAATGCCTGgggaa                                                                                  >  1:415704/1‑275 (MQ=21)                                                                                                                                                                            aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCACCAAtt                                                                                                                                                                                                                                                                   >  1:32230/1‑97 (MQ=255)                                                                                                                                                                                cACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg                                                                                                                                                                                                                                                               <  2:32229/97‑1 (MQ=255)                                                                                                                                                                                      agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                                                                                                                                            >  1:146256‑M1/84‑142 (MQ=255)                                                                                                                                                                                      agcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                                                                                                                                            <  2:146255‑M1/59‑1 (MQ=255)                                                                                                                                                                                        gCCAGCGGCTTACCAACCAGCTCGACCATTCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGNGTTCACCGACAAACAACCGATAAAACGAAAGGCCCAGTCTATCGACTGAGCCTTTCGGTTTATTTGATTCATGGAGAAGTaattcctgcca                                                                     <  1:481586‑M2/275‑12 (MQ=255)                                                                                                                                                                                             accgacaaacaacagataaaacgaaagggccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCTCGCCACCCTCCGGGCCGTTGCTTCCCAAAGTTCACATCCGCGTCCGCCGGAGTTGTCCTACTCCGGAGAGCGTTCNcc                                                                                                                                                         <  1:513558‑M1/110‑1 (MQ=255)                                                                                                                                                                                             accgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCATGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc                                                                                                                                                                                       <  1:116155‑M1/80‑1 (MQ=255)                                                                                                                                                                                                 acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt                                                                                                                                                                                   >  2:116154‑M1/73‑156 (MQ=255)                                                                                                                                                                                                                          ccagtctttcgactcagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc                                                                                                                             >  1:420694‑M1/48‑185 (MQ=255)                                                                                                                                                                                                                           cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAACGAAAAGCCCAGTCTTTCGACTGAGCCTTTAGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggagggcgtccttcccgccacactccggg                                  <  1:430713‑M2/275‑47 (MQ=255)                                                                                                                                                                                                                             ggAGCTCCGATGATAAGCTGTCAAACCTGAGAATTCCGATCCCCAATTCCTGGCAGTTGATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACAGACAAACAACAGATAAAACGAAAGGccc                                                                                                                             <  1:537947/182‑1 (MQ=255)                                                                                                                                                                                                                              gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                                                >  2:273637/1‑130 (MQ=255)                                                                                                                                                                                                                              gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc                                                                                                                                                          >  1:261919/1‑152 (MQ=255)                                                                                                                                                                                                                                  tcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCATGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCCAATCCGCTCCCGGCGGATTTGTCCTCCTCAGGAGAGCGTTCCCCGCCAAACCACAGATAAAACGAAAGGCCCCGTCTTTCGACTGAGCCttt                                                                                                         <  2:179294‑M1/158‑1 (MQ=255)                                                                                                                                                                                                                                  tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCt                                                                                                                                                                            <  1:273641/130‑1 (MQ=255)                                                                                                                                                                                                                                  tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac                                                                                                                                                      <  2:261915/152‑1 (MQ=255)                                                                                                                                                                                                                                   cgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg                                                                                                                                                                                                                                                     <  2:18050‑M1/18‑1 (MQ=255)                                                                                                                                                                                                                                   ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcaatttatggcgggcctccctcccgccaccctccgggccgctgc                           <  1:104985‑M2/274‑54 (MQ=255)                                                                                                                                                                                                                                       tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg                                                                                                                                                                                                                                                 >  1:18051‑M1/35‑56 (MQ=255)                                                                                                                                                                                                                                       tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGACGTCCTGCCCGCCACCCTCCGGGCCg                                                                                                                                                                                                                      >  1:469364‑M1/35‑83 (MQ=255)                                                                                                                                                                                                                                        gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg                                                                                                                                                                                                                                                     <  1:438530‑M1/18‑1 (MQ=255)                                                                                                                                                                                                                                        gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcg                                                                                                                                                                                         <  2:372514‑M1/78‑1 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgg                                                                                                                                                                                                                                                 >  2:438525‑M1/30‑51 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                                                                                                                                                                                                  >  1:390727‑M1/30‑66 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggcgg                                                                                                                                                                                     >  1:372518‑M1/30‑111 (MQ=255)                                                                                                                                                                                                                                            ctttcgttttatttgangcctgtggaattAATTCCTCGCAGTTTATGGTGGGTGTCCTGCCCGCCACCCTCCGGGCCCTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAt                                                                                            >  1:522303‑M1/30‑200 (MQ=255)                                                                                                                                                                                                                                               tcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                                                                                                                                                                                                  <  2:608605‑M1/37‑1 (MQ=255)                                                                                                                                                                                                                                               tcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                                                                                                                                                                                                  >  1:608614‑M1/27‑63 (MQ=255)                                                                                                                                                                                                                                                            tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGGCCTTCGCCTGAGCCTTTCGTTTTAATTGATGCCTGGGGCATTGGGGATTAATTCTTAAAGAAGAAAGGGCCTCGTGATACGCCTATTTTTTTAGGGTAATGTTATGTTAAGatccatccc  <  2:572753‑M1/261‑5 (MQ=255)                                                                                                                                                                                                                                                                 ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt                                                                                                                                                                               <  2:230708‑M1/88‑1 (MQ=255)                                                                                                                                                                                                                                                                     aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa                                                                                                                                                                           >  1:230711‑M1/5‑96 (MQ=255)                                                                                                                                                                                                                                                                       ttAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTACGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGGTTGGTCGTACTCAGGAAAGCGTTCACCGACAAACAACAGATAAAACGAACGGACCAGTCTTTCg                                                                                                                    <  2:587‑M1/147‑1 (MQ=255)                                                                                                                                                                                                                                                                        tAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAg                                                                                                                                 <  2:113600‑M1/134‑1 (MQ=255)                                                                                                                                                                                                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt                                                                                                                                                                                  >  2:126239/1‑85 (MQ=35)                                                                                                                                                                                                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                                                >  2:477590/1‑87 (MQ=35)                                                                                                                                                                                                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc                                                                                                                                                                             >  1:439991/1‑90 (MQ=35)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                     TTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCG  >  CP009273/359840‑360364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.