New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	13 (0.380)	28 (0.820)	24/324	0.4	49.1%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	45 (1.310)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

GCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTGTTTCGGGTCGGGTGAATCTTG  >  CP009273/360023‑360547                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                      gCCAGCGGCTTACCAACCAGCTCGACCATTCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGNGTTCACCGACAAACAACCGATAAAACGAAAGGCCCAGTCTATCGACTGAGCCTTTCGGTTTATTTGATTCATGGAGAAGTaattcctgcca                                                                                                                                                                                                                                                            <  1:481586‑M2/275‑12 (MQ=255)                                    cAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAACGAAAAGCCCAGTCTTTCGACTGAGCCTTTAGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggagggcgtccttcccgccacactccggg                                                                                                                                                                                                                         <  1:430713‑M2/275‑47 (MQ=255)                                            ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcaatttatggcgggcctccctcccgccaccctccgggccgctgc                                                                                                                                                                                                                  <  1:104985‑M2/274‑54 (MQ=255)                                                                     tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGGCCTTCGCCTGAGCCTTTCGTTTTAATTGATGCCTGGGGCATTGGGGATTAATTCTTAAAGAAGAAAGGGCCTCGTGATACGCCTATTTTTTTAGGGTAATGTTATGTTAAGatccatccc                                                                                                                                                                                         <  2:572753‑M1/261‑5 (MQ=255)                                                                                        tGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCAt                                                                                                                                                                                                        >  2:53115/1‑240 (MQ=255)                                                                                            aGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGa                                                                                                                                                                                                    <  1:53116/240‑1 (MQ=255)                                                                                              ttgaTGGCGGCTGTCCTTCTCTCCACCCTCCGGGCCGTTCCTTCGCAACGTTCAAGTCCGCTCCTAGCGAATTTTTCCTACTCATGAGAGCGTTCACCTACAAACAACAGATAAAACGANAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGTAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                                                                                                                                                  <  1:572762/269‑1 (MQ=21)                                                                                                                  cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTAGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCAAGCCGACCAGGCTTTCCACGCCCTNTTTCCGCTCCATTTCttttcctcat                                                                                                                                            >  2:460669/1‑267 (MQ=21)                                                                                                                          tCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAtt                                                                                                                                                                                                                          >  1:155932/1‑188 (MQ=255)                                                                                                                            cGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATTTCGTTACCGCGGTTGTCgcgga                                                                                                                                  >  2:179431/1‑270 (MQ=255)                                                                                                                              ggCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTta                                                                                                                                                                                                                      <  2:155931/188‑1 (MQ=255)                                                                                                                               gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGATCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTGATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAAcgcg                                                                                                                              <  1:179433/275‑1 (MQ=255)                                                                                                                                    tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg                                                                                                                                                                                                                                >  2:118374/1‑172 (MQ=255)                                                                                                                                        tCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTa                                                                                                                                                                                                                            <  1:118375/172‑1 (MQ=255)                                                                                                                                                               ggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaatt                                                                                                                                                                                                                                                                   <  2:34141‑M2/110‑5 (MQ=255)                                                                                                                                                                   gATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctg                                                                                                                                                                                                                                                               >  1:34142‑M2/1‑102 (MQ=255)                                                                                                                                                                              cTCAGGAGAGCGTTCACCGACAAGCAACGTATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACNCCCGCGTGCCGCTCCATGTCGtt                                                                                                                                                   >  1:478409/1‑207 (MQ=255)                                                                                                                                                                                  ggAGAGCTTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                               <  2:478402/207‑1 (MQ=255)                                                                                                                                                                                   gagaGCGTTCACCGACAAACAACAGATAAAACGAGAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATAc                                                                                                                                                                                                                                 >  1:453292/1‑124 (MQ=255)                                                                                                                                                                                      agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgca                                                                                                                                                                                                            <  2:146255‑M2/142‑60 (MQ=255)                                                                                                                                                                                      agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgca                                                                                                                                                                                                            >  1:146256‑M2/1‑83 (MQ=255)                                                                                                                                                                                      agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTGAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCGCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCCCAAGCCCGTAGTCCCGTTCGAGCGtgcag                                                                       >  1:276794/1‑271 (MQ=255)                                                                                                                                                                                       gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCt                                                                                                                                                                                                                             <  2:453287/124‑1 (MQ=255)                                                                                                                                                                                        cGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt                                                                                                                                                                                                                                                          >  2:508986/1‑94 (MQ=255)                                                                                                                                                                                            atccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTCTCGTTTTATTTGATACCTGGGGAATTCGGAATTAATTCTTGaa                                                                                                                                                                                                                                                      <  1:508993/92‑1 (MQ=17)                                                                                                                                                                                             aCCGACAAACAACAGATAAAACGAAAGGGCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtccttctcgccaccctccgggccgttgcttcccaaagttcacatccgcgtccgccggagttgtcctactccggagagcgttcncc                                                                                                                                                         <  1:513558‑M2/186‑111 (MQ=255)                                                                                                                                                                                             aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcatgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggc                                                                                                                                                                                       <  1:116155‑M2/156‑81 (MQ=255)                                                                                                                                                                                                 acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggat                                                                                                                                                                                   >  2:116154‑M2/1‑72 (MQ=255)                                                                                                                                                                                                  caaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGtt                                                                                                                                                   >  2:205992/1‑187 (MQ=255)                                                                                                                                                                                                      caacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                                                                                                                                               <  1:205994/187‑1 (MQ=255)                                                                                                                                                                                                       aacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGCTACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCAAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGGTCTCTGAAACGCGCTGCCGCGTTTCGTGCTTGTCACGCNCAAGCCCGCAGTCCCTCCCGATTGTCGCGCACACGTCAGCCAgtt                                                       >  2:431231/1‑272 (MQ=38)                                                                                                                                                                                                        acaGAAAAAACGAAAGGCCCAGTCTTTCGCCGGAGCCTTTCGTTTTATTTGATGCCGGGGGAATTGTGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAGACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGgcg                                                     <  2:276790/275‑1 (MQ=255)                                                                                                                                                                                                         caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATACAGCCGACCAGGCtt                                                                                                                                                                                >  1:162636/1‑151 (MQ=255)                                                                                                                                                                                                             tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCa                                                                                                                                                                            <  2:162635/151‑1 (MQ=255)                                                                                                                                                                                                                      aGGGCCAGTCTTTTGTCTGAGTCTTTTTGTTTTTTTTAGTCCTGGGGAATTGGGAATTATTTCTTGAAGACGAAAGGTCCTNGTGATACGNCTATTTTTATAGATTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTGCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTAGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGAt                                        <  1:466257/274‑1 (MQ=255)                                                                                                                                                                                                                      aGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcg                                                                                                                                                 >  2:402178/1‑169 (MQ=255)                                                                                                                                                                                                                          ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcgcg                                                                                                                                             <  1:402182/169‑1 (MQ=255)                                                                                                                                                                                                                          ccAGTCTTTCGACTCAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggccc                                                                                                                             >  1:420694‑M2/1‑47 (MQ=255)                                                                                                                                                                                                                                 ttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATcc                                                                                                                                                                                              >  2:293179/1‑113 (MQ=255)                                                                                                                                                                                                                                  tCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcatgcccgccaccctccgggccgttgcttcgcaacgttccaatccgctcccggcggatttgtcctcctcaggagagcgttccccgccaaaccacagataaaacgaaaggccccgtctttcgactgagccttt                                                                                                         <  2:179294‑M2/197‑159 (MQ=255)                                                                                                                                                                                                                                  tCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGc                                                                                                     >  1:338985/1‑201 (MQ=255)                                                                                                                                                                                                                                   cGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatg                                                                                                                                                                                                                                                     <  2:18050‑M2/56‑19 (MQ=255)                                                                                                                                                                                                                                     aCTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGcc                                                                                                                                                                                          <  1:293183/113‑1 (MQ=255)                                                                                                                                                                                                                                      cTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCaa                                                                                                 <  2:338981/201‑1 (MQ=255)                                                                                                                                                                                                                                       tGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcggacgtcctgcccgccaccctccgggccg                                                                                                                                                                                                                      >  1:469364‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                       tGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgg                                                                                                                                                                                                                                                 >  1:18051‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccg                                                                                                                                                                                         <  2:372514‑M2/111‑79 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatg                                                                                                                                                                                                                                                     <  1:438530‑M2/51‑19 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCt                                                                                                                                                                                                                                                          >  2:90430/1‑46 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGa                                                                                                                                                                                                                                    >  1:461584/1‑68 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                                                                                                                                                   >  1:165685/1‑85 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGcc                                                                                                                                                                                          >  2:192302/1‑110 (MQ=255)                                                                                                                                                                                                                                        gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCAGTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCAAGGAGGGTGtt                     >  1:345141/1‑275 (MQ=255)                                                                                                                                                                                                                                         aGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTc                                                                                                                                                                                                                                        >  2:588709/1‑63 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcgg                                                                                                                                                                                     >  1:372518‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcca                                                                                                                                                                                                                                  >  1:390727‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgg                                                                                                                                                                                                                                                 >  2:438525‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGTAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGAcc                                                                                                                                                                                      <  1:192304/110‑1 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa                                                                                                                                                                                                                                                      <  1:90431/46‑1 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg                                                                                                                                                                                                                                <  2:461578/68‑1 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                                                                                                                                               <  2:165684/85‑1 (MQ=255)                                                                                                                                                                                                                                            cTTTCGTTTTATTTGANGCCTGTGGAATTaattcctcgcagtttatggtgggtgtcctgcccgccaccctccgggcccttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgat                                                                                            >  1:522303‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                             tttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGa                                                                                                                                                                                                                                    <  1:588718/63‑1 (MQ=255)                                                                                                                                                                                                                                               tCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcca                                                                                                                                                                                                                                  >  1:608614‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                                               tCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgcca                                                                                                                                                                                                                                  <  2:608605‑M2/63‑38 (MQ=255)                                                                                                                                                                                                                                                            tGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccaggccttcgcctgagcctttcgttttaattgatgcctggggcattggggattaattcttaaagaagaaagggcctcgtgatacgcctatttttttagggtaatgttatgttaagatccatccc  <  2:572753‑M2/274‑262 (MQ=255)                                                                                                                                                                                                                                                                 ggggAATTaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgt                                                                                                                                                                               <  2:230708‑M2/96‑89 (MQ=255)                                                                                                                                                                                                                                                                 ggggAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                                                                                                                                                   >  2:302426/1‑60 (MQ=255)                                                                                                                                                                                                                                                                 ggggAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                                                                                                                                                   >  2:344376/1‑60 (MQ=255)                                                                                                                                                                                                                                                                     aattgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                                                                                                                                               <  1:344380/60‑1 (MQ=255)                                                                                                                                                                                                                                                                     aattgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                                                                                                                                               <  1:302430/60‑1 (MQ=255)                                                                                                                                                                                                                                                                     aattaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtccta                                                                                                                                                                           >  1:230711‑M2/1‑4 (MQ=255)                                                                                                                                                                                                                                                                       ttaattcctggcagtttatggcgggcgtcctgcccgccaccctacgggccgttgcttcgcaacgttcaaatccgctcccggcgggttggtcgtactcaggaaagcgttcaccgacaaacaacagataaaacgaacggaccagtctttcg                                                                                                                    <  2:587‑M2/149‑148 (MQ=255)                                                                                                                                                                                                                                                                        taattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaag                                                                                                                                 <  2:113600‑M2/135‑135 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                      GCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTGTTTCGGGTCGGGTGAATCTTG  >  CP009273/360023‑360547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.