New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1413126 =	35 (1.020)	12 (0.360)	6/312	1.9	24.6%	coding (199/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	1413206 =	40 (1.210)					coding (279/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein

CCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAA  >  CP009273/1412905‑1413330                                                                                                                                                                                                                              |                                                                                                                                                                                                             ccTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGCTTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAATAGTTTACTGTCGCATTTAATGCTTATCCTGAAATACCTTGGCTCTTTCAGATTCTCGTTTTTTCCTTTTATTTCTTGGTCGCCATTTCCTTCTCAAGCTTTCGATCATATATTCACTAGTATTATTCCTTACTTcc                                                                                                                                                                >  2:2000/1‑268 (MQ=255)  cTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTTGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAAc                                                                                                                                                        <  1:2000/275‑1 (MQ=255)     aCAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACATTGGCTCTTTCAGATTATNGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGAATTATTAATTACTACCAGAGCAACGAg                                                                                                                                                     >  1:541175/1‑275 (MQ=255)                  aTTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCaga                                                                                                                                                             <  1:33515/254‑1 (MQ=255)                                tGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCt                                                                                                                                                                                                              >  1:203311/1‑191 (MQ=255)                                    tttACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTtctc                                                                                                                                                                                                          <  2:203309/191‑1 (MQ=255)                                         tCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAATATTGCGAGCACATATTCAACAGCATTATTCATTACTAACAGAGCAACGAGTATTGCTTCTTTTATCTGAGAAATAAATCGATTTAt                                                                                                                 >  2:574494/1‑275 (MQ=255)                                            aTTGTTGAAACTTTTAGCTAACGAGCCACGCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCNAGATTTCGAGCACATATTCAAAAGCATTATTCATTACTACCAGATCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTa                                                                                                              >  1:474894/1‑275 (MQ=255)                                                 taaaaTTTTTTGAAAAAGAGCAACTAGAAATACTTATGTATACGTTTATCATTTTTTGTCTCACTTTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAt                                                                                                         <  2:541166/273‑1 (MQ=255)                                                    aaCTTTTTGCTAACGATCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTTTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAAACGCTGTATTTAAAGATTTc                                                                                                      <  1:560181/275‑1 (MQ=255)                                                                                   tATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCTCATTCAATGCTTATACTGAACTACCTTGGCTCTTTCAGATTAGCGTTTTTGCCTTTTCTTACGGGGTCGCCATTTCCTTCTCAAGAGTGCGAGCACATATTCACAAGCATTATGCATTACTACCATAGAAACGAGTATTGATTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTACTTAAAACGGGAAATCtgacgaacacct                                                                          >  2:36811/1‑261 (MQ=255)                                                                                   tATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCattatt                                                                                                                                                                          >  2:503584/1‑176 (MQ=255)                                                                                       tataCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTAAAAAGCATTGTTCAtt                                                                                                                                                                      <  1:503591/176‑1 (MQ=255)                                                                                          aCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGttt                                                                                                                                        >  1:69157/1‑203 (MQ=255)                                                                                            gATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTaa                                                                                                             >  2:63132/1‑228 (MQ=255)                                                                                              ttATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCt                                                                                                                                    <  2:69156/203‑1 (MQ=255)                                                                                                         tcactctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTATCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                    <  2:214161‑M1/59‑1 (MQ=255)                                                                                                             tctgatgttgaatgatgcccttccgttctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                >  1:214163‑M1/114‑176 (MQ=255)                                                                                                                                   agagTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTATTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTGCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCCACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAACATTTCCTTAAAACAGGAAATCTTATTATCACTTCCCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTc                       <  1:36812/275‑1 (MQ=255)                                                                                                                                     agTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTtc                                                                                                                                                                                                            <  1:558193/92‑1 (MQ=255)                                                                                                                                       tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                    <  2:258896‑M1/59‑1 (MQ=255)                                                                                                                                       tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                    <  2:64462‑M1/59‑1 (MQ=255)                                                                                                                                         tACTGTCGCATTCAATGCTTATACTGCAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATtac                                                                                                                                                                    >  2:584834/1‑128 (MQ=255)                                                                                                                                           attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                >  1:64463‑M1/84‑146 (MQ=255)                                                                                                                                           attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                >  1:258900‑M1/84‑146 (MQ=255)                                                                                                                                             gTCGCATTCAATGCTTATACTGCAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTAcc                                                                                                                                                                <  1:584843/128‑1 (MQ=255)                                                                                                                                                   ttCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCag                                                                                                                                                              >  2:288679/1‑124 (MQ=255)                                                                                                                                                       aTGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCa                                                                                                                                                          <  1:288683/124‑1 (MQ=255)                                                                                                                                                        tGCTTATACTTAAATTCCTTTGTTCTTTCAGATTATATTTTTTGCCTTTTTTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCNAAGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTAATAGCGCaa  <  1:574503/275‑1 (MQ=255)                                                                                                                                                            tataCTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAgaaagaaa                                                                                                                          >  1:74642/1‑151 (MQ=255)                                                                                                                                                                cTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGc                                                                                                                      <  2:74641/151‑1 (MQ=255)                                                                                                                                                                         cTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCa                      >  1:247808/1‑238 (MQ=255)                                                                                                                                                                          agtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                    <  1:14652‑M1/59‑1 (MQ=255)                                                                                                                                                                           tGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTa                                                     >  2:286432/1‑205 (MQ=255)                                                                                                                                                                             gCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACAt                  <  2:247804/238‑1 (MQ=255)                                                                                                                                                                              ataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                >  2:14651‑M1/49‑111 (MQ=255)                                                                                                                                                                               tctTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGaa                                                 <  1:286436/205‑1 (MQ=255)                                                                                                                                                                                 ataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                    <  2:218490‑M1/59‑1 (MQ=255)                                                                                                                                                                                   tCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTaa                                                                                                             >  1:423226/1‑141 (MQ=255)                                                                                                                                                                                     gatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                >  1:218492‑M1/42‑104 (MQ=255)                                                                                                                                                                                       aTTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAt                                                                                                         <  2:423222/141‑1 (MQ=255)                                                                                                                                                                                           tCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                    >  2:249697/1‑94 (MQ=255)                                                                                                                                                                                           tCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCt                                                                                     >  2:66739/1‑157 (MQ=255)                                                                                                                                                                                               ttttGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                <  1:249701/94‑1 (MQ=255)                                                                                                                                                                                               ttttGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttatt                                                                                 <  1:66740/157‑1 (MQ=255)                                                                                                                                                                                                                     gcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTACTCATTACTACCAGAGCAACGAGt                                                                                                                                                    <  1:34523‑M1/59‑1 (MQ=255)                                                                                                                                                                                                                         tttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTACTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                >  2:34522‑M1/6‑68 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                             CCTTACAGTTGAGAGTTATTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAA  >  CP009273/1412905‑1413330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.