New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1444620 =	17 (0.500)	5 (0.150)	4/308	2.4	30.2%	coding (987/2274 nt)	tynA	tyramine oxidase, copper‑requiring
	?	CP009273	1444886 =	7 (0.210)					coding (721/2274 nt)	tynA	tyramine oxidase, copper‑requiring

TAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATCAGGATCACCGTAAGGCACAATCATGCCGCCGAGAGAACCTTCGTACATGACTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGC  >  CP009273/1444357‑1444868                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         tactgagatctccctgctaccgccagataaagaagctgtctgggcgtttgcgctggaaaacaaaccggttgaccagccgcgcaaagccgacgtcattatgctcgacggcaaacatatcatcgaagcggtggtggatctgcaaaacaacaaactgctctcctggcaacccattaaagacgcccacggtatggtgttgctggatgatttcgccagtgtgcagaacattattaacaacagtgaagaatttgccgctgccgtgaagaaa                                                                                                                                                                                                                                                         >  1:66116‑M1/264‑265 (MQ=255)                                                    ccGTAAGGCACAATCATGCCGCCGAGAGAAACTTCGTACATGACATTGCGTTTGGTGCAATTGTCGTTATAGGTCACGGTGGAGAGCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGGGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGGCACGGCCATCAAATGGGCGTGCAGTCATTGGCACCGGAACTACCGGACattctac                                                                                                                                                                                            >  1:380404/1‑273 (MQ=255)                                                                                             gACTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGGGCAACGCGGTCCCGGCCACCAAATGGGGGTGCGGTCATTTGCACCGGGACTACCGGAACTGATGCAATCTTAACGAGTTTTTTCTGTTTTAAATAAACGaatcgcc                                                                                                                                                   >  2:595016/1‑269 (MQ=255)                                                                                                               ctcttgctttccaGTCACGGTGGAGATCATCGGCCCGCCGCGATAGTTCATGCTGTGGTGATATTCCCAGTTCCTCCCGTGAATCATATCGCCAGTAATGGTGTAATTTTTAACGTCAGGCTCAATGATTTTAATAGGCGTGAGTGCCTGAGCAATGCGGTCACGGCCATCAAATGGGAGTGCGGTCATTGTCACCGGAACTACCGGACCTACTTCAATCTTAACGATTTTTTTCTATACTAAATCAACGACCGCGACCAGGTTTTCGATGGGAt                                                                                                                                 <  2:45563/263‑1 (MQ=255)                                                                                                                                cGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAAcgcg                                                                                                                                                                                                                                                     >  1:304568/1‑142 (MQ=255)                                                                                                                                    ggAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCa                                                                                                                                                                                                                                                 <  2:304564/142‑1 (MQ=255)                                                                                                                                               gCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCa                                                                                                                                                                                                                                                 >  2:514699/1‑131 (MQ=255)                                                                                                                                                   gACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTGAATGATTTGCATAGGTTTAACTGCCGGCGCAACGCGGTCACGGc                                                                                                                                                                                                                                             <  1:514706/131‑1 (MQ=255)                                                                                                                                                    aCGCGATAGTTCATGCTGAGGTGAAAATGCCAGTTCCGCCAGTGGATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTAATTGGCa                                                                                                                                                                                                                  >  1:498077/1‑157 (MQ=255)                                                                                                                                                        gagaGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCgg                                                                                                                                                                                                              <  2:498070/157‑1 (MQ=255)                                                                                                                                                         agagTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCACCGACCGCCACCAGGTTTTCGATGGGATGGTCCAAGTAGTTGCCACCACCGACATCAAGATACCtgatg                                                                                        >  2:48795/1‑274 (MQ=255)                                                                                                                                                             ttCATGCTGAGGTTAATATCCCAGTTCCGCCAGTTAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGTCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACt                                                                                     <  1:48796/273‑1 (MQ=255)                                                                                                                                                                           tgctggatgatttcGCCAGTGAATCAGATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGCTTTATTTCTGTTCTAANTCAACGACNGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAAATAGTTGATGACTTTGAGCAACCGGGCa                                                                      >  1:459118/14‑274 (MQ=255)                                                                                                                                                                                              ggtgttgctggatgatttcgccagtgtgcagaacattattaacaacagtgaagaatttgccgctgccgtgaagaaa                                                                                                                                                                                                                                                         <  1:55289‑M1/2‑1 (MQ=255)                                                                                                                                                                                                  ttgctggatgatttcgccagtgtgcagaacattattaacaacagtgaagaatttgccgctgccgtgaagaAAcgcg                                                                                                                                                                                                                                                     >  2:55288‑M1/71‑76 (MQ=255)                                                                                                                                                                                                   tgctggatgatttcgccagtgtgcagaacattattaacaacagtgaagaatttgccgctgccgtgaagaAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATATCTGGTGACTTGTAGCAACAGGGCANCTTTTTTCACACCATCTTCACCAt                                             <  2:394287‑M1/206‑1 (MQ=255)                                                                                                                                                                                                                       aaTTTTTCCCTGCAGCCTCATTGATTTGCATAGGCTTAACCGCCGGAGCAACGCGTTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCNTAACGATTTTTATCCGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAgc                         <  1:595025/275‑1 (MQ=255)                                                                                                                                                                                                                              aCCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAACTCAACGACCGCCCCCAGGTTTTAGATGGGTTGTGCCCAGTAGTTACCATCACCGACATCAAGATAGCTTATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATa                                      >  1:348510/1‑255 (MQ=255)                                                                                                                                                                                                                              aCCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCAACATCAAGATAGCTGATAACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCACCGACATAACCTAAGGTCAGCGACGTg                   >  1:416278/1‑274 (MQ=255)                                                                                                                                                                                                                                attattaacaacagtgaagaatttgccgctgccgtgaagaAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCagta                                                                                                                       <  2:346368‑M1/132‑1 (MQ=255)                                                                                                                                                                                                                                    ttaacaacagtgaagaatttgccgctgccgtgaagaAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTg                                                                                                                   >  1:346372‑M1/37‑172 (MQ=255)                                                                                                                                                                                                                                              tgaagaatttgccgctgccgtgaagaAACGCGTTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGc  >  1:394291‑M1/27‑275 (MQ=255)                                                                                                                                                                                                                                                 ggaattggcctctgccgtgaagaATCGCTGTCACGTCCATCAAATGGGCGTGCGTTCATTGGCACCGTAACTACCGGACCTTCTTCAATCTGAAGTATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGTATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGc  >  1:371566‑M1/24‑272 (MQ=255)                                                                                                                                                                                                                                                        gCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTAcc                                                                                                                                                                                                       >  2:432127/1‑68 (MQ=255)                                                                                                                                                                                                                                                            aaCTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGAc                                                                                                                                                                                                   <  1:432132/68‑1 (MQ=255)                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         TAGTCACCAGAGTCCAGATACGCTTTAAAGTACCAGCCAATATCAGGATCACCGTAAGGCACAATCATGCCGCCGAGAGAACCTTCGTACATGACTTTGCGTTTGGTGCCATTGTCGTTATAAGTCACGGTGGAGATCATCGGCCCGACGCGAGAGTTCATGCTGAGGTGAAAATCCCAGTTCCGCCAGTGAATCATATCGCCAGTAATGGTGTAATTTTTACCTTCAGGCTCAATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGC  >  CP009273/1444357‑1444868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.