New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1444620 =	17 (0.500)	5 (0.150)	4/308	2.4	30.2%	coding (987/2274 nt)	tynA	tyramine oxidase, copper‑requiring
	?	CP009273	1444886 =	7 (0.210)					coding (721/2274 nt)	tynA	tyramine oxidase, copper‑requiring

TCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTA  >  CP009273/1444636‑1445148                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                       tcctaTGGGNGTTGGGTCATTTGCACCGGAACTACCGGACCTTCTTCAATCTTAACG‑TTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCa                                                                                                                                                                                                                                               <  2:261918/271‑1 (MQ=255)  gcgaaaaaagtgattaccacgccgctgaccgtaggttatttcgatggtaaagatggcctgaaacaagatgcccggttgctcaaagtcatcagctatcttgatgtcggtgatggcaactactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacgcccatttgatggccgtgaacgcgttTCTTCACGGCAGCGGCAAATTCTTCa                                                                                                                                                                                                                                               >  1:394291‑M2/250‑275 (MQ=255)  gcgaaaaaagtgattaccacgccgctgaccgtaggttatttcgatggtaaagatggcctgaaacaagatgcccggttgctcaaagtcatcagctatcttgatgtcggtgatggcaactactgggcacataccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatacttcagattgaagaaggtccggtagttacggtgccaatgaacgcacgcccatttgatggacgtgacagcgatTCTTCACGGCAGAGGCCAattcc                                                                                                                                                                                                                                                  >  1:371566‑M2/250‑271 (MQ=255)          cGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGA‑TTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCACTCTTTACCATCGAAATAACTTACGGTCAACGGCGTGGTAATCACTTTTTTCGCATAAGTAATACCGCGTTTCTTCACGACCGCAGAAAAttc                                                                                                                                                                                                                                                   >  1:261922/1‑262 (MQ=255)                                            cttcAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACAGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGATCTGCAAACTGGAAAAatccaccaac                                                                                                                                                                                                     >  1:304221/1‑268 (MQ=255)                                             atggtgaagatggtgtgaaaaaagntgccctgttgctacaagtcaccagatatcttgatgtcggtgatggcaactactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacgcccatttgatggccgtgaccgcgttTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCa                                                                                                                                                                                                    <  2:394287‑M2/69‑1 (MQ=255)                                                                                                             gCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCAc                                                                                                                                                                                                                                              >  1:82068/1‑169 (MQ=255)                                                                                                                 agtagtTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAAttc                                                                                                                                                                                                                                                   >  1:281734/1‑160 (MQ=255)                                                                                                                 agtagtTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACtgtt                                                                                                                                                                                                                                          <  2:82067/169‑1 (MQ=255)                                                                                                                   caactactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacgcccatttgatggccgtgaccgcgttTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTtaa                                                                                                                                                                                                                                     >  1:346372‑M2/137‑172 (MQ=255)                                                                                                                     gtTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCa                                                                                                                                                                                                                                               <  2:281730/160‑1 (MQ=255)                                                                                                                       tactgggcacatcccatcgaaaacctggtggcggtcgttgatttagaacagaaaaaaatcgttaagattgaagaaggtccggtagttccggtgccaatgaccgcacgcccatttgatggccgtgaccgcgttTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTaataat                                                                                                                                                                                                                                 <  2:346368‑M2/40‑1 (MQ=255)                                                                                                                                                                                                                                                     cgcgttTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCaa                                                                                                                                                                                                   >  2:55288‑M2/7‑76 (MQ=255)                                                                                                                                                                                                                                                         ttTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACAcc                                                                                                                                                                                               <  1:55289‑M2/74‑1 (MQ=255)                                                                                                                                                                                                                                                         ttTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTa  >  1:66116‑M2/3‑265 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                       TCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTTCTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCTTCACGGCAGCGGCAAATTCTTCACTGTTGTTAATAATGTTCTGCACACTGGCGAAATCATCCAGCAACACCATACCGTGGGCGTCTTTAATGGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTA  >  CP009273/1444636‑1445148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.