New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 237781	38 (1.380)	4 (0.150)	3/260	NT	8.9%	coding (2010/2445 nt)	fadE	acyl coenzyme A dehydrogenase
	?	CP009273	= 238095	46 (1.760)					coding (1696/2445 nt)	fadE	acyl coenzyme A dehydrogenase

TTCATCCAGACGGGTAAACGGCAGGTTTTTACCCAGCTCTTTACAGATCCGCTGATGAATTGGGTCGGCGGCAATCACATCCACCAGCGCCTCTTCCAGCAAGCCAACCGGATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCAGCACGGCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGCTGCCGCCCAGCA  >  CP009273/237520‑238004                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                ttCATCAAGATGGGTAAACGGGAGGTTTTTACCCAGCTCTTTCCAGATCCGCTGATGAATTGGGTCGGCGGCAATCGCAGCCACCAGAGCCTCTTCCAGCACGCCAGCCGGATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAAGGC‑GGGAACGGGTGGCGTTCGGCACTTGGAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCAcg                                                                                                                                                                                                                     <  1:150924/274‑1 (MQ=255)                                     ctctTTACAGATCCGCTGATGAATTGGGTCGGCGGCAATCACATCCACCAGCGCCTCCTCCAGCAAGCCAACCGGATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCt                                                                                                                                                                                >  1:466738/1‑275 (MQ=255)                                         ttACAGCTCCGCTGATGAAGTAGGTCGGCGGCAATCACATCCACCAGCGCCTCTTCCAGCAAGCCAACCGGATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGtt                                                                                                                                                                             <  1:311511/274‑1 (MQ=255)                                             aGATCTGCTTATGAATTGGGTCGGCGGCAATCACATCCACCAGCGCCTCTTCCAGCAAGCCAACCGGATTATGCTCGCTCGGCGTCATGTACTGACCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGc                                                                                                                                                                         <  1:265974/274‑1 (MQ=255)                                                            ttGGGTCGGCGGCAATCACATCCACCAGCGCCTCTTCCAGCAAGCCAACCGGATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGCGGGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGttt                                                                                                                                                                                                      >  1:166537/1‑231 (MQ=255)                                                                                                            cgngATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCAGCATGCTCGCGGCTCGGGAAGTTTTGCa                                                                                                                                                                                                  <  1:388631/183‑1 (MQ=255)                                                                                                                aTTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGC‑GGGAACGAGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGtt                                                                                                                                                                             <  1:17746/203‑1 (MQ=255)                                                                                                                                           aCCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCa                                                                                                                                                                                                                           >  2:348794/1‑130 (MQ=255)                                                                                                                                           aCCGCGACCAATGC‑GGGAACGCGATGCGCGCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGcc                                                                                                                                                                                 >  1:398754/1‑172 (MQ=255)                                                                                                                                             cgcgACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGt                                                                                                                             <  1:299749/222‑1 (MQ=255)                                                                                                                                               cgACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCa                                                                                                                                                                                                                       <  1:348799/130‑1 (MQ=255)                                                                                                                                               cgACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGcc                                                                                                                                                                                 >  1:514282/1‑168 (MQ=255)                                                                                                                                               cgACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGtt                                                                                                                                                                             <  2:398748/172‑1 (MQ=255)                                                                                                                                                   cAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGtt                                                                                                                                                                             <  2:514275/168‑1 (MQ=255)                                                                                                                                                               cGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGcc                                                                                                                                                                                 >  1:355621/1‑153 (MQ=255)                                                                                                                                                                  gTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCa                                                                                                                                                            >  1:252975/1‑171 (MQ=255)                                                                                                                                                                   tggctgtCGGCATTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGAGAAGATCACCACATTAAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGtt                                                                                                                                                                             <  2:355616/147‑1 (MQ=255)                                                                                                                                                                      cGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCtt                                                                                                                                                        <  2:252973/171‑1 (MQ=255)                                                                                                                                                                                                  tttATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCacgccaaccggcgatgccactaaacgctactatcagcacctgaaccgcctgagcgccaacctcgccctgctttctgatgtctcgatggcag                                                                                                                                      >  2:171112‑M1/1‑70 (MQ=255)                                                                                                                                                                                                  tttATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCt                                                                                                                                                         >  2:550521/1‑142 (MQ=255)                                                                                                                                                                                                      tGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCacgccaaccggcgatgccactaaacgctactatcagcacctgaaccgcctgagcgccaacctcgccctgctttctgatgtctcgatggcagtgct                                                                                                                                  <  1:171113‑M1/161‑96 (MQ=255)                                                                                                                                                                                                      tGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTa                                                                                                                                                     <  1:550529/142‑1 (MQ=255)                                                                                                                                                                                                            aGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATa                                                                                                                                                                   >  2:463473/1‑122 (MQ=255)                                                                                                                                                                                                            aGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCt                                                                                                                                                         >  1:409653/1‑132 (MQ=255)                                                                                                                                                                                                            aGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCAGCACGGCAGAGGCGAGGt                                                                       >  1:329058/1‑214 (MQ=255)                                                                                                                                                                                                              cTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAg                                                                                                                                             >  1:428455/1‑142 (MQ=255)                                                                                                                                                                                                                tGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAgc                                                                                                                                                               <  1:463480/122‑1 (MQ=255)                                                                                                                                                                                                                tGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTa                                                                                                                                                     <  2:409646/132‑1 (MQ=255)                                                                                                                                                                                                                tGTCAGAAGGTGCCAGAGAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCAGCACGGCAGAGGCGAGGTagag                                                                   <  2:329053/214‑1 (MQ=255)                                                                                                                                                                                                                  tCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTTCa                                                                                                                                         <  2:428448/142‑1 (MQ=255)                                                                                                                                                                                                                    aGAAGGTGCCATGTAATGATGGCCGGTCGGGAAGATCACCACATTCGGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCAGCACGGCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGCTGCCGCCCAGCa  <  1:272438/275‑1 (MQ=255)                                                                                                                                                                                                                               gATAATTACGNCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGTAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCACCACGGCAGAGGCGAgg                                                                        <  1:427020/194‑1 (MQ=255)                                                                                                                                                                                                                                    tGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCacgccaaccggcgatgcccctaaacgctactatcagcccctgaaccgcctgagcgccaacctcgccctgcttcctgctgtctcgatcgcag                                                                                                                                      >  2:236404‑M1/1‑36 (MQ=255)                                                                                                                                                                                                                                        gTCCGGTCGGGAAGATCACCACATTCAGCAGCacgccaaccggcgatgccactaaacgctactatcagcacctgaaccgcctgagcgccaacctcgccctgctttctgatgtctcgatggcagtgct                                                                                                                                  <  1:236406‑M1/127‑96 (MQ=255)                                                                                                                                                                                                                                         tCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTg                                                                                                                                                                                                    >  1:4659/1‑60 (MQ=255)                                                                                                                                                                                                                                         tCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCAGCACGGCAGATGCGAGGt                                                                       >  1:301573/1‑185 (MQ=255)                                                                                                                                                                                                                                             gTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGt                                                                                                                                                                                                <  2:4659/60‑1 (MQ=255)                                                                                                                                                                                                                                                       tCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGccc                                                                                                                                                >  1:123267/1‑98 (MQ=255)                                                                                                                                                                                                                                                        caccacATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGccc                                                                                                                                                >  2:291069/1‑97 (MQ=255)                                                                                                                                                                                                                                                           cacaTTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGt                                                                                                                                            <  2:123266/98‑1 (MQ=255)                                                                                                                                                                                                                                                            acaTTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGt                                                                                                                                            <  1:291073/97‑1 (MQ=255)                                                                                                                                                                                                                                                                  agcagcCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAatc                                                                                                                                                                                           >  1:40787/1‑44 (MQ=255)                                                                                                                                                                                                                                                                   gcagcacgccaaccggcgatgccactaaacgctactatcagcacctgaaccgcctgagcgccaacctcgccctgctttctgatgtctcgatggcagtgctgggcggcagcctgaaacgtcgc                                                                                                            >  2:39009‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                                                     agcacgccaaccggcgatgccactaaacgctactatcagcacctgaaccgcctgagcgccaacctcgccctgctttctgatgtctcgatggcagtgctgggcggcagcctgaaacgtcgcgagcgcatctcggcccgtctgggggatattttaagccagctctacctcgcgtctgccgtgctgnagcgttatnacgacgacggccgtaatgaagccgac         >  1:384591‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                                      gcCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATcatcc                                                                                                                                                                                       <  2:40787/44‑1 (MQ=255)                                                                                                                                                                                                                                                                       cacgccaaccggcgatgccactaaacgctactatcagcacctgaaccgcctgagcgccaacctcgccctgctttctgatgtctcgatggcagtgctgggcggcagcctgaaacgtcgcgagc                                                                                                        <  1:39009‑M1/122‑122 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                TTCATCCAGACGGGTAAACGGCAGGTTTTTACCCAGCTCTTTACAGATCCGCTGATGAATTGGGTCGGCGGCAATCACATCCACCAGCGCCTCTTCCAGCAAGCCAACCGGATTATGCTCGCTCGGCGTCAGGTACTGACCGCGACCAATGC‑GGGAACGGGTGGCGTTCGGCACTTGTAAAATCTTCGCCACTTTATGATCCAGCTTGTCAGAAGGTGCCAGATAATGACGTCCGGTCGGGAAGATCACCACATTCAGCAGCCCGGCAACCACGCGGTTCGGGAAGTTTTGCAGTAAATCATCCATCGCCTGTTCAGCCTGATACAGCGCATCTTGTACGCCCCAGTGCACCAGCGGCAGGTCGGCTTCATTACGGCCTTCGTCGTCATAACGCTTCAGCACGGCAGAGGCGAGGTAGAGCTGGCTTAAAATATCCCCCAGACGGGCCGAGATGCGCTCGCGACGTTTCAGGCTGCCGCCCAGCA  >  CP009273/237520‑238004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.