New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1413126 =	21 (0.760)	6 (0.230)	3/262	NT	17.6%	coding (199/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	1413206 =	36 (1.360)					coding (279/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein

TTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAG  >  CP009273/1412923‑1413391                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                          ttGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAATACTTATGTATCCGATCATCATTTTTGGTCTCACTCTCTGGCTGATACCGCAAGAGTTTACTGTCGAATTAAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTTGTCGCCATTTCTTTCTCAAGCTTGCGAGCACATATTCAAAAGCATGATTCATTACTACCAAAGAAACGGATCTTTCTTCGTTTa                                                                                                                                                                                                    >  2:394685/1‑275 (MQ=255)                               tgATACTTTTTTCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACNGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTACCTGAGCAAGAAATTGCTGTATTTAAAGAt                                                                                                                                                                      <  1:394691/275‑1 (MQ=255)                                 aaaCTTTTTGCTAACGAGCCACTCTAAAGACTTATTTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAttt                                                                                                                                                                    <  1:16553/275‑1 (MQ=255)                                                      ctctAAATACTTATGTATACGATTATCATTTTTTGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttat                                                                                                                                               <  1:307650/275‑1 (MQ=255)                                                              aCTTATGTATGCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCATCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACt                                                                                                                                        >  1:560058/1‑274 (MQ=255)                                                                                                                acgagTTTCCTTTCGCATTCAATTCTTATACTGAAATACCTTTGCTCTTTCAGATTTTCGTTTTTTCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCAtt                                                                                     <  2:560050/273‑1 (MQ=255)                                                                                                                     tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                                                                                 <  1:23834‑M1/59‑1 (MQ=255)                                                                                                                     tctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                                                                                 <  2:316086‑M1/59‑1 (MQ=255)                                                                                                                      ctaattttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTAAAAAGCATTATTCATTACTACCAGAGCAACGAGt                                                                                                                                                                                                                 <  2:356583‑M1/59‑1 (MQ=255)                                                                                                                         attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                                                                             >  1:316090‑M1/84‑146 (MQ=255)                                                                                                                         attttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                                                                             >  2:23834‑M1/84‑146 (MQ=255)                                                                                                                          ttttttcataaccgggttacggcaaggagaagtgataataagatttcctgttttaaggaaatctttaaatacagcgatttctTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTg                                                                                                                                                                                                             >  1:356588‑M1/83‑145 (MQ=255)                                                                                                                             cGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATCTTCCTAAGCATTATTCATTACTACCAGAGCAACGAGTAt                                                                                                                                                                                                               >  2:28497/1‑140 (MQ=255)                                                                                                                                 ttCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCt                                                                                                                                                                                                           <  1:28497/140‑1 (MQ=255)                                                                                                                                 ttCAATGCTTATACTGAAATACCGTGGCACTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCa                                                                                                                                                                                                                                                  >  1:407552/1‑101 (MQ=255)                                                                                                                                    aaTGCTTATACTGAACTACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTTCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTCAAGATTTCCTTAACACAAGAAATCTTATTCTCACTTCTCCTTGCCTTAACCCGGTTATGACAACATTATAACGTAAGGTCATCATTCAACCTCAGAGTGATaactc                                                                 >  2:525047/1‑271 (MQ=255)                                                                                                                                     aTGCTTATACTGAAATACCTTTGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTTGTCGCCATTTCCTTCTCAAGATTGCAGGCACATATTCAAAAg                                                                                                                                                                                                                                              <  2:407545/101‑1 (MQ=255)                                                                                                                                                 aaaTACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTc                                                                                                                                                                                                                                                   >  1:515851/1‑84 (MQ=255)                                                                                                                                                     aCCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCaaaa                                                                                                                                                                                                                                               <  2:515844/84‑1 (MQ=255)                                                                                                                                                         tGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCaaa                                                                                                                                                                                                                                                >  1:10749/1‑79 (MQ=255)                                                                                                                                                           gCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATAAGAACGGAAAGGCATCATTCAACATCAATGTGATAGCGAAAACTGTTCTTATNATCTCGCCa                                          >  2:209524/1‑275 (MQ=255)                                                                                                                                                             tctTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCa                                                                                                                                                                                                                                            <  2:10749/79‑1 (MQ=255)                                                                                                                                                                     aTTTTCGTTTTTGCCTTTTCTTTTGTTGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATa                                <  1:209526/275‑1 (MQ=255)                                                                                                                                                                                      ttctttcGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCa                                                                                                                                                                                                                                            >  2:1498/1‑54 (MQ=255)                                                                                                                                                                                          ttcGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCattat                                                                                                                                                                                                                                        <  1:1498/54‑1 (MQ=255)                                                                                                                                                                                             gTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTg        >  1:49823/1‑275 (MQ=255)                                                                                                                                                                                                   tccATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAANAATCGCTGTATTTAAAGATATCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAAcag  <  1:429970/274‑1 (MQ=255)                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                          TTGATATGTTGGATGTATTTACTCCATTGTTGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAG  >  CP009273/1412923‑1413391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.