New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1413126 =	21 (0.760)	6 (0.230)	3/262	NT	17.6%	coding (199/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein
	?	CP009273	1413206 =	36 (1.360)					coding (279/489 nt)	sieB	Rac prophage; phage superinfection exclusion protein

TGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCGTTAGCTTACTGTGTGCTTCTCCAACCA  >  CP009273/1412953‑1413439                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                          tgATACTTTTTTCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACNGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTACCTGAGCAAGAAATTGCTGTATTTAAAGAt                                                                                                                                                                                                                      <  1:394691/275‑1 (MQ=255)   aaaCTTTTTGCTAACGAGCCACTCTAAAGACTTATTTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAttt                                                                                                                                                                                                                    <  1:16553/275‑1 (MQ=255)                        ctctAAATACTTATGTATACGATTATCATTTTTTGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttat                                                                                                                                                                                               <  1:307650/275‑1 (MQ=255)                                aCTTATGTATGCGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCATCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACt                                                                                                                                                                                        >  1:560058/1‑274 (MQ=255)                                                                                  acgagTTTCCTTTCGCATTCAATTCTTATACTGAAATACCTTTGCTCTTTCAGATTTTCGTTTTTTCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCAtt                                                                                                                                     <  2:560050/273‑1 (MQ=255)                                                                                                      aaTGCTTATACTGAACTACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTTCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTCAAGATTTCCTTAACACAAGAAATCTTATTCTCACTTCTCCTTGCCTTAACCCGGTTATGACAACATTATAACGTAAGGTCATCATTCAACCTCAGAGTGATaactc                                                                                                                 >  2:525047/1‑271 (MQ=255)                                                                                                                             gCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATAAGAACGGAAAGGCATCATTCAACATCAATGTGATAGCGAAAACTGTTCTTATNATCTCGCCa                                                                                          >  2:209524/1‑275 (MQ=255)                                                                                                                                       aTTTTCGTTTTTGCCTTTTCTTTTGTTGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATa                                                                                <  1:209526/275‑1 (MQ=255)                                                                                                                                                               gTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTg                                                        >  1:49823/1‑275 (MQ=255)                                                                                                                                                                     tccATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAANAATCGCTGTATTTAAAGATATCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAAcag                                                  <  1:429970/274‑1 (MQ=255)                                                                                                                                                                                          cGAGGAAATATNAAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCg                             <  2:49823/275‑1 (MQ=255)                                                                                                                                                                                               caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGaaaaaa                                                                                                                                                          >  1:356588‑M2/64‑145 (MQ=255)                                                                                                                                                                                               caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                         >  1:316090‑M2/64‑146 (MQ=255)                                                                                                                                                                                               caatactcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAAt                                                                                                                                                         >  2:23834‑M2/64‑146 (MQ=255)                                                                                                                                                                                                   atTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCtta                                                                                                                                                                                                >  1:455879/1‑103 (MQ=255)                                                                                                                                                                                                   actcgttgctctggtagtaatgaataatgctttttaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAg                                                                                                                                                      <  2:356583‑M2/86‑1 (MQ=255)                                                                                                                                                                                                   actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                     <  1:23834‑M2/87‑1 (MQ=255)                                                                                                                                                                                                   actcgttgctctggtagtaatgaataatgcttttgaatatgtgctcgcaatcttgagaaAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGa                                                                                                                                                     <  2:316086‑M2/87‑1 (MQ=255)                                                                                                                                                                                                       aaaaGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTtattat                                                                                                                                                                                            <  2:455872/103‑1 (MQ=255)                                                                                                                                                                                                         aaGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTaa                                                                                                                                                                                                                          >  2:516075/1‑71 (MQ=255)                                                                                                                                                                                                         aaGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCttatta                                                                                                                                                                                             >  1:151093/1‑100 (MQ=255)                                                                                                                                                                                                         aaGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGa                                                                                                                                                >  1:460022/1‑145 (MQ=255)                                                                                                                                                                                                            cATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAAt                                                                                                                                                                                                                                      >  1:455995/1‑56 (MQ=255)                                                                                                                                                                                                             attattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGAt                                                                                                                                                                                                                      <  1:516083/71‑1 (MQ=255)                                                                                                                                                                                                             attattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCAc                                                                                                                                                                                         <  2:151092/100‑1 (MQ=255)                                                                                                                                                                                                             attattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAggg                                                                                                                                            <  2:460015/145‑1 (MQ=255)                                                                                                                                                                                                              ttattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTGAAACAGGAAATCt                                                                                                                                                                                                  >  1:47336/1‑90 (MQ=255)                                                                                                                                                                                                               tattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACa                                                                                                                                                                                                          >  1:226486/1‑81 (MQ=255)                                                                                                                                                                                                               tattCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAgg                                                                                                                                             >  2:104235/1‑142 (MQ=255)                                                                                                                                                                                                                attCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCt                                                                                                                                                                                                                                  <  2:455988/56‑1 (MQ=255)                                                                                                                                                                                                                  tCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTTAAACAGGAAATCttatt                                                                                                                                                                                              <  2:47336/90‑1 (MQ=255)                                                                                                                                                                                                                   cATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGaa                                                                                                                                                                                                      <  2:226484/81‑1 (MQ=255)                                                                                                                                                                                                                   cATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGcat                                                                                                                                         <  1:104235/142‑1 (MQ=255)                                                                                                                                                                                                                     ttACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTAGNAAAAAATTAGACCGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCGTTAGCTTACTGTGTGCTTCTCCAACCa  <  1:525055/275‑1 (MQ=255)                                                                                                                                                                                                                                   aCGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAAc                                                                                                                                                   >  2:341658/1‑116 (MQ=255)                                                                                                                                                                                                                                    cGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACa                                                                                                                                                                                                          >  1:374295/1‑60 (MQ=255)                                                                                                                                                                                                                                       gTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGaa                                                                                                                                               <  1:341663/116‑1 (MQ=255)                                                                                                                                                                                                                                        tATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGaa                                                                                                                                                                                                      <  2:374290/60‑1 (MQ=255)                                                                                                                                                                                                                                         aTTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACa                                                                                                                                                                                                          >  1:81285/1‑55 (MQ=255)                                                                                                                                                                                                                                             cTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGaa                                                                                                                                                                                                      <  2:81285/55‑1 (MQ=255)                                                                                                                                                                                                                                             cTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACt                                                                                                            >  2:195921/1‑145 (MQ=255)                                                                                                                                                                                                                                                 gTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTc                                                                                                        <  1:195923/145‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                          TGAAACTTTTTGCTAACGAGCCACTCGAAAGACTTATGTATACGATTATCATTTTTGGTCTCACTCTCTGGCTGATACCGAAAGAGTTTACTGTCGCATTCAATGCTTATACTGAAATACCTTGGCTCTTTCAGATTATCGTTTTTGCCTTTTCTTTCGTGGTCGCCATTTCCTTCTCAAGATTGCGAGCACATATTCAAAAGCATTATTCATTACTACCAGAGCAACGAGTATTGCTTCGTTTATCTGAGAAAGAAATCGCTGTATTTAAAGATTTCCTTAAAACAGGAAATCTTATTATCACTTCTCCTTGCCGTAACCCGGTTATGAAAAAATTAGAACGGAAGGGCATCATTCAACATCAGAGTGATAGCGCAAACTGTTCTTATTATCTCGTCACCGAAAAATACTCCCATTTTATGAAGTTATTCTGGAACAGCAGGAGTAGACGTTTTAATCGTTAGCTTACTGTGTGCTTCTCCAACCA  >  CP009273/1412953‑1413439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.