New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1559498	15 (0.540)	4 (0.150)	4/260	NT	20.9%	coding (493/2400 nt)	dosP	oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator
	?	CP009273	= 1559747	16 (0.610)					coding (244/2400 nt)	dosP	oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator

TCGGTGATATCCGAGAAAGTCATTACCAGGTTCTGCAGATGCGCGAGCACGTCATAAACCGGGCTGATAGAGGCTTTAATCCAGATTTTTTCACCGGTGCGCGTCAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGT  >  CP009273/1559242‑1559764                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                           tcGGTGAGAGACAAGAAAGTCATTACCAGGTTCTTCAGATGCGCGAGCACGTCATAAACCGGGCTGATAGAGGCTTTAATCCAGATTTTGTCACCGGTGCGCGTCAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATtgcactgca                                                                                                                                                                                                                                                           <  2:124870/274‑1 (MQ=255)                                         gcgcGAGCACGTCATAAACCGGGCTGATAGAGGCTTTAATCCAGATTTTTTCACCGGTGCGCGTCAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCAAGATTGCACTGCACAATATAGCTTTCCGGATCGAGGACAATAACCAgacggtcg                                                                                                                                                                                                                  >  1:332027/1‑275 (MQ=255)                                                                   aTAGAGGCTTTAATCCAGATTTTTTCACCGGTGCGCGTCAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATtgcac                                                                                                                                                                                                                                                               >  1:423333/1‑204 (MQ=255)                                                                       agGCTTTAATCCAGATTTTTTCACCGGTGCGCGTCAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATtgcactgca                                                                                                                                                                                                                                                           <  2:423326/204‑1 (MQ=255)                                                                                                         cAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAAgcgcgtgttgaggggatgagtcgggagctgcagctggagaaaaaagacggc                                                                                                                                                                                                                         >  1:119611‑M1/1‑153 (MQ=255)                                                                                                           aCAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGATAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATcc                                                                                                                                                <  1:504508/275‑1 (MQ=255)                                                                                                             agcagAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAAgcgcgtgttgaggggatgagtcgggagctgcagctggagaaaaaagacggcagta                                                                                                                                                                                                                     <  2:119611‑M1/204‑56 (MQ=255)                                                                                                                       cGTCCTGATCGCGTGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGcc                                                                                                                                    <  1:30801/275‑1 (MQ=255)                                                                                                                                                                                   ggAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACtt                                                                                                     >  2:139240/1‑246 (MQ=255)                                                                                                                                                                                       ttCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGa                                                                                                 <  1:139241/246‑1 (MQ=255)                                                                                                                                                                                              aTGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAAgcgcgtgttgaggggatgagtcgggagctgcagctggagaaaaaagacgg                                                                                                                                                                                                                          >  1:384959‑M1/1‑68 (MQ=255)                                                                                                                                                                                                 ttCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCCCTCACTTTCGATAGCGCAAACCGGGTCCAGATTTTACTGCCGTCttttt                                                           >  1:84433/1‑274 (MQ=255)                                                                                                                                                                                                  tCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAAgcgcgtgttgaggggatgagtcgggagctgcagctggagaaaaaagacggcagt                                                                                                                                                                                                                      <  2:384953‑M1/118‑55 (MQ=255)                                                                                                                                                                                                                       tACCGCTGGCTTCTCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCg                                                                                                                                                                                                                                       >  2:456132/1‑80 (MQ=255)                                                                                                                                                                                                                           gCTGGCTTCTCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGa                                                                                                                                                                                                                                   <  1:456139/80‑1 (MQ=255)                                                                                                                                                                                                                               gCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGAt                                                                                                                                                                                                                                                                    >  2:376610/1‑43 (MQ=255)                                                                                                                                                                                                                                   cGCTAAGGGAGTAACCTAACATTTCGGTAAATGCGCGATtgca                                                                                                                                                                                                                                                                <  1:376615/43‑1 (MQ=255)                                                                                                                                                                                                                                       aaTGCAGTAACCAATCATTTCGGTAAATGCGCGATTGCACTTCACAATTTGGCGTTCCGGATTGAGGACAATCACCGGTCGGTCGCGATGGTCAACGGCAATAATCAATTGTCGGCTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCCGCTCCCGACTCATCCCCTCAACAcgcg                    <  1:338073/275‑1 (MQ=255)                                                                                                                                                                                                                                                          tCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCACGACTCATCCCATCCACCCCCGATCTAACCACTTCACGGt  >  1:94671/1‑274 (MQ=255)                                                                                                                                                                                                                                                              tAAAgcgcgtgttgaggggatgagtcgggagctgcagctggagaaaaaagacggcagtaaaatctggacccgttttgcgctatcgaaagtgagcgccgaggggaaagtttattacctggcgctggtacgggatgc                                                                                                                                         <  2:402349‑M1/135‑132 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                           TCGGTGATATCCGAGAAAGTCATTACCAGGTTCTGCAGATGCGCGAGCACGTCATAAACCGGGCTGATAGAGGCTTTAATCCAGATTTTTTCACCGGTGCGCGTCAACAGCAGAAATTCGTCCTGATCGCGGGCGGTTTTCCATAGCAACTGTTGTAAACGAATGCGGTTATCGGCAGGGAATTCAGGAATGTTCAGGAGTGTATCGGGCTGCATACCGCTGGCTTCGCTAATGCAGTAACCAAACATTTCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGT  >  CP009273/1559242‑1559764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.