New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1559498	15 (0.540)	4 (0.150)	4/260	NT	20.9%	coding (493/2400 nt)	dosP	oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator
	?	CP009273	= 1559747	16 (0.610)					coding (244/2400 nt)	dosP	oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator

TCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTATCCGCATCGGT  >  CP009273/1559491‑1559981                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                           tCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCACGACTCATCCCATCCACCCCCGATCTAACCACTTCACGGt                                                                                                                                                                                                                           >  1:94671/1‑274 (MQ=255)                        cacaATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATgc                                                                                                                                                                                                    >  1:178953/1‑274 (MQ=255)                                     tCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATCTATTAAGGATCCGCAGGACGCAAATc                                                                                                                                                                                      >  1:63684/1‑275 (MQ=255)                                             gcggaagctaccgggtcgttcGGGATGGTCAACGGCATTAATCAATTTTCGGTTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTAACAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGa                                                                                                                                                                               <  2:63684/261‑1 (MQ=255)                                                               gtcgAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGa                                                                                                                                                                                                                      >  2:86695/1‑217 (MQ=255)                                                                   agaTGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGaa                                                                                                                                                                                                                  <  1:86695/217‑1 (MQ=255)                                                                                                                               gCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCttta                                                                                                                                                                                                                                        <  2:402349‑M2/135‑5 (MQ=255)                                                                                                                               gCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCACTGACTTCTTCACGTTTGTATCCCCAGCGCTTCCCTGCGGCGGGGACCAAAAAcaccac                                                                                            >  2:38082/1‑275 (MQ=255)                                                                                                                                   cccGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCAGCTCGTCGCCTCACCACGCGCTTTACCGc                                                                                                                                                                                                                                    <  1:402355/135‑1 (MQ=255)                                                                                                                                            gaggcAGGTCATAACCTTTCCCCTCGTCGCTCACCTTCGATAGCTCAAACCGGGTCCAGCTTTTTCTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCg                                                                               <  2:178952/271‑1 (MQ=255)                                                                                                                                             cgcCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCtt                                                                                                                                                                                                                                 >  2:533605/1‑128 (MQ=255)                                                                                                                                                 aGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACg                                                                                                                                                                                                                             <  1:533613/128‑1 (MQ=255)                                                                                                                                                            tttCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGTGTCCAGATTTTACTGCCGTCTTTGTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACATGCGCTTTACCGCCGTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCAc                                                               <  1:293200/275‑1 (MQ=255)                                                                                                                                                            tttCCCCGCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCAc                                                               <  1:38082/275‑1 (MQ=255)                                                                                                                                                              tCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCACATCCcg                                                                                                                                                                                   >  2:15169/1‑157 (MQ=255)                                                                                                                                                                  cTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGa                                                                                                                                                                               <  1:15169/157‑1 (MQ=255)                                                                                                                                                                                                           tACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCtttaccgaaatgtttggttactgcattagcgaagccagcggtatgcagcccgatacactcctgaacattcctgaattccctgccgataaccgcattcgtttacaacagttgctatggaaaaccgcccgcgatcaggacgaatttctgct                                                                                       <  2:119611‑M2/204‑150 (MQ=255)                                                                                                                                                                                                           tACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCAACATTTGCTCAAGGGCGGGGAAAAAATTACCATaggcgcaa                >  2:140217/1‑272 (MQ=255)                                                                                                                                                                                                            aCTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCtttaccgaaatgtttggttactgcattagcgaagccagcggtatgcagcccgatacactcctga                                                                                                                                                                            <  2:384953‑M2/118‑65 (MQ=255)                                                                                                                                                                                                               gCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCtttaccgaaatgtttggttactgcattagcgaagccagcggtatgcagcccgatacactcctgaacattcctgaattccctgccgataaccgcattcgtttacaacagttgctatggaaaaccgcccgcgatcaggacgaatttctgctgttg                                                                                   >  1:119611‑M2/1‑51 (MQ=255)                                                                                                                                                                                                                ccGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCtttaccgaaatgtttggttactgcattagcgaagccagcggtatgcagcccgatacactcctgaacat                                                                                                                                                                        >  1:384959‑M2/1‑50 (MQ=255)                                                                                                                                                                                                                         ttCTCCAGCTGCAGCTCCCGACTCTTCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCTCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTATCCGCATCGGt  <  1:140218/275‑1 (MQ=255)                                                                                                                                                                                                                          gcgacgtcTGCAGCTCCCGCCTCAGCCCCTCACCCCCCGCCTTACCGCCTTCCCGGTTGTGGCGAATGTATTCAGTAGGCACAGGCCGCGACTCCCGCGGAAGCAGGTTATCAAGTTGATTGCCAATTACTTATTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGTGGTTGAAAAACATCACTTCATCATTTTCGTTAAGTAACTCCGCACCCATCATTTTTTGCTCAAGAGCGGGGAAAAAAATGCAATCTGCTGCATTATCCGCATCGGt  <  2:94671/267‑1 (MQ=255)                                                                                                                                                                                                                                                                gcTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCcgcg                                                                                                                                                                                 >  1:485708/1‑61 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                           TCGGTAAATGCGCGATTGCACTGCACAATATGGCGTTCCGGATCGAGGACAATCACCGGTCGGTCGAGATGGTCAACGGCAATAATCAATTGTCGGGTCTGTTCTTTTTGCGCCATTTCTACGCTGGCATCCCGTACCAGCGCCAGGTAATAAACTTTCCCCTCGGCGCTCACTTTCGATAGCGCAAAACGGGTCCAGATTTTACTGCCGTCTTTTTTCTCCAGCTGCAGCTCCCGACTCATCCCCTCAACACGCGCTTTACCGCCTTCACGGTTGTGACGAATGTATTCAGGATGCGCAGGACGCAAATCCCGCGGAATCAGCATATCAATGTTATTGCCAATGACTTCTTCACGTTTGTATCCCCAGAGCTTCTCTGCGGCGGGGTTGAAAAACATCACTTCATCATTTTCGTTAATTAACACCGCACCCATCATATTTTGCTCAAGGGCGGGGAAAAAAATGCCATCGGCGGCATTATCCGCATCGGT  >  CP009273/1559491‑1559981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.