New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2684986 =	20 (0.720)	5 (0.190)	4/266	NT	20.2%	intergenic (‑287/+29)	glmY/purL	sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase
	?	CP009273	2685123 =	20 (0.750)					coding (3780/3888 nt)	purL	phosphoribosylformyl‑glycineamide synthetase

TTTATGTCTCCTCCGCTGTTTGAATGTAAATCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAG  >  CP009273/2684776‑2685254                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                             tttATGTCTCCTCCGCTGTTTGAATGTAAATCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATgc                                                                                                                                                                                                               >  1:138783/1‑274 (MQ=255)           ctccGCTGTTTGAATGTAAATCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTNGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCAATggg                                                                                                                                                                                                    >  1:447051/1‑275 (MQ=255)                catggtgaagggtgtgtggaagtgcgtgatgcggcgcatctggcggcactggaaagcaaagggctggtggcactgcgctatgtcgataacttcggcaaagtcactgaaacctacccggctaacccgaacggttcaccgaacggtattacggcagtcacgactgaaagtggtcgagtcaccattatgatgccgcacCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATc                                                                                                                                                                                               >  1:204444‑M1/196‑275 (MQ=255)                                                                                        aaaTCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCgg                                                                                                                                                                                                                                                                           >  1:186142/1‑127 (MQ=255)                                                                                            cAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTg                                                                                                                                                                                                                                                                       <  2:186141/127‑1 (MQ=255)                                                                                             aaTGAGTTAAGTGTCGCCAGAAATCGACATGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAAc                                                                                                                                                                                                                                                                 >  1:404851/1‑132 (MQ=255)                                                                                                 aGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAAt                                                                                                                                                                                                                                                             <  2:404844/132‑1 (MQ=255)                                                                                                                  aaGGGACACGGCAAACCCCCCAGTGTCGTGATTTACGGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTg                                                                                              <  2:138782/274‑1 (MQ=255)                                                                                                                              ctacccggctaacccgaacggttcaccgaacggtattacggcagtcacgactgaaagtggtcgagtcaccattatgatgccgcacCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGc                                                                                                                                                                                                                        <  1:430379‑M1/55‑1 (MQ=255)                                                                                                                                acccggctaacccgaacggttcaccgaacggtattacggcagtcacgactgaaagtggtcgagtcaccattatgatgccgcacCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGTGCATCCATGGGc                                                                                                                                                                                                   <  1:509874‑M1/76‑1 (MQ=255)                                                                                                                                  ccggctaacccgaacggttcaccgaacggtattacggcagtcacgactgaaagtggtcgagtcaccattatgatgccgcacCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGaa                                                                                                                                                                                                                    >  2:430372‑M1/82‑140 (MQ=255)                                                                                                                                  caccCATTGTCGTTATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCCTCCTCGCCCCAGTTTTCCTGCTGCCAGGAGTTGCTGACAGTCCGGAAAACACGTTcc                                                                                                                                        >  2:497394/1‑216 (MQ=255)                                                                                                                                    ggctaacccgaacggttcaccgaacggtattacggcagtcacgactgaaagtggtcgagtcaccattatgatgccgcacCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATc                                                                                                                                                                                               >  2:509867‑M1/80‑159 (MQ=255)                                                                                                                                     ccATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGaaaa                                                                                                                                                                                                                  >  1:437707/1‑139 (MQ=255)                                                                                                                                      cATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTACTTAATGACGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGt                                                                                                                                    <  1:497401/216‑1 (MQ=255)                                                                                                                                         tGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATgcg                                                                                                                                                                                                              <  2:437700/139‑1 (MQ=255)                                                                                                                                            cGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGt                                                                                                                                                                  >  1:445632/1‑180 (MQ=255)                                                                                                                                                aTTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTTCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTTCt                                                                                                                                                              <  2:445625/180‑1 (MQ=255)                                                                                                                                                         cacaAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCg                                                                                                >  1:9125/1‑233 (MQ=255)                                                                                                                                                                      ccGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATggg                                                                                                                                                                                                                                                          >  2:315469/1‑66 (MQ=255)                                                                                                                                                                          aGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTga                                                                                                                                                                                                                                                      <  1:315473/66‑1 (MQ=255)                                                                                                                                                                                      aTGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATggg                                                                                                                                                                                                                                                          >  2:181677/1‑50 (MQ=255)                                                                                                                                                                                      aTGATAGTGGTTGGTGATTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGt                                                                                      >  1:412964/1‑214 (MQ=255)                                                                                                                                                                                          tAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATa                                                                                  <  2:412957/214‑1 (MQ=255)                                                                                                                                                                                          tAGTGGTTGGGGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTga                                                                                                                                                                                                                                                      <  1:181678/50‑1 (MQ=255)                                                                                                                                                                                                             ccGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTAcc                                                                                                                                                                                                                                             >  2:184157/1‑40 (MQ=255)                                                                                                                                                                                                              cGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCCTTGCGGAAAATGCGCATCCATCGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGCCAGTACGGAACACACGTGCCGGGTGCGGCATCATAATGCTGACTCGACCACTTTCAGTCGTTAATGCCGTACTACCCATCGGAGACCCTTTCGTGTTAGCCGGGTCTGTTTCAGTGACTTTGCCGAAGTTGTTGACCTAgcttatggccacgtc  >  2:25574/1‑261 (MQ=255)                                                                                                                                                                                                              cGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCa                                                                                                                                                                       >  1:204039/1‑109 (MQ=255)                                                                                                                                                                                                                 aTCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCaa                                                                                                                                                                                                                                         <  1:184158/40‑1 (MQ=255)                                                                                                                                                                                                                  tCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAg                                                                                                                                                                   <  2:204037/109‑1 (MQ=255)                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                             TTTATGTCTCCTCCGCTGTTTGAATGTAAATCAGCCACTGTGTCGCTAAAAAGAGACAACTTAAGATAAACTTATTAGATAATATTAAAATCAATGAGTTAAGTGTCGCCAGAAAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAG  >  CP009273/2684776‑2685254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.