New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2684986 =	20 (0.720)	5 (0.190)	4/266	NT	20.2%	intergenic (‑287/+29)	glmY/purL	sRNA activator of glmS mRNA, glmZ processing antagonist/phosphoribosylformyl‑glycineamide synthetase
	?	CP009273	2685123 =	20 (0.750)					coding (3780/3888 nt)	purL	phosphoribosylformyl‑glycineamide synthetase

AAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAGCCCTTTGCTTTCCAGTGCCGCCAGATGCGCCGCATCACGCACTTCCACGCGCCCTTCACCATGAGAGACAGCAATCGGCATT  >  CP009273/2684889‑2685336                                                                                                                                                                                                                                           |                                                                                                                                                                                                                      aaGGGACACGGCAAACCCCCCAGTGTCGTGATTTACGGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTg                                                                                                                                                                                <  2:138782/274‑1 (MQ=255)                     cATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTACTTAATGACGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGt                                                                                                                                                                                                                      <  1:497401/216‑1 (MQ=255)                                        cacaAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCg                                                                                                                                                                                  >  1:9125/1‑233 (MQ=255)                                                                     aTGATAGTGGTTGGTGATTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGt                                                                                                                                                                        >  1:412964/1‑214 (MQ=255)                                                                         tAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATa                                                                                                                                                                    <  2:412957/214‑1 (MQ=255)                                                                                             cGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCCTTGCGGAAAATGCGCATCCATCGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGCCAGTACGGAACACACGTGCCGGGTGCGGCATCATAATGCTGACTCGACCACTTTCAGTCGTTAATGCCGTACTACCCATCGGAGACCCTTTCGTGTTAGCCGGGTCTGTTTCAGTGACTTTGCCGAAGTTGTTGACCTAgcttatggccacgtc                                                                                    >  2:25574/1‑261 (MQ=255)                                                                                                          cAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATACATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAGAACACGTTCCGGGTGCGGCATCATAATGGTGACACGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGAATTTGCCGAAGTTAACCACATAGAGCAATACAACCAACCCTGttccttcc                                                                       >  1:260960/1‑274 (MQ=255)                                                                                                                         gacgacTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCg                                                                                                                                                                                  >  2:101074/1‑152 (MQ=255)                                                                                                                         gacgacTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAGCCCTTTGCTTTCCAGTGCCGCCAGATgcg                                                       <  1:218713/275‑1 (MQ=255)                                                                                                                             acTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGAc                                                                                                                                                                              <  1:101074/152‑1 (MQ=255)                                                                                                                                        cTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAg                                                                                                              >  1:36153/1‑205 (MQ=255)                                                                                                                                        cTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATACTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTAGAcc                                                                                                                                                                                             >  2:81365/1‑126 (MQ=255)                                                                                                                                            ttACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACtt                                                                                                                                                                                         <  1:81365/126‑1 (MQ=255)                                                                                                                                            gtACGCTCAGTGCGGAAAATGCGCATCCATGGGCCATGCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTAt                                                                                                          <  2:36153/204‑1 (MQ=255)                                                                                                                                             tACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTAt                                                                                                          >  2:148989/1‑204 (MQ=255)                                                                                                                                                 cgcATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGAc                                                                                                      <  1:148990/204‑1 (MQ=255)                                                                                                                                                           gatggcccatggatgcgcattttccgcaatgcgcgtaagcagttggggtaagtcgtcagcccattggttttgcagcccggGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGcc                                                                                                                                         >  2:509867‑M2/81‑159 (MQ=255)                                                                                                                                                           gatggcccatggatgcgcattttccgcaatgcgcgtaagcagttggggtaagtcgtcagcccattggttttgcagcccggGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAGCCCTTTGCTTTCCAGTGCCGCCAGATGCGCCGCATCACGCACTTCCACACACCCTTCACCATg                     >  1:204444‑M2/81‑275 (MQ=255)                                                                                                                                                               gcccatggatgcacattttccgcaatgcgcgtaagcagttggggtaagtcgtcagcccattggttttgcagcccggGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGt                                                                                                                                     <  1:509874‑M2/83‑1 (MQ=255)                                                                                                                                                                 cccgtCCATGGGCCATTCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGTAATACCCGTTCCGGGTGCTGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAGCCCTTTGCTTTCCAGTGCCGCCAGATGCGCCGCATCACGCACTTCCACGCGCCCTTCACCATGAGAGAc               <  1:228472/271‑1 (MQ=255)                                                                                                                                                                                ttccgcaatgcgcgtaagcagttggggtaagtcgtcagcccattggttttgcagcccggGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCgg                                                                                                                                       >  2:430372‑M2/60‑140 (MQ=255)                                                                                                                                                                                tCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGGGTCAGTGACTTTGCTGAAGGTATCGACATAGCGCAGTGCACGCAGCCCTTTGATTTCCATGACGGCCAGGTGCACCGCATCAAGCACGTCGCCGCCGCCCTCACCATGCAAGACAGCaacgggccct  >  2:228470/1‑265 (MQ=255)                                                                                                                                                                                    gcaatgcgcgtaagcagttggggtaagtcgtcagcccattggttttgcagcccggGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAg                                                                                                                                   <  1:430379‑M2/85‑1 (MQ=255)                                                                                                                                                                                    cGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTg                                                                                                                                                                                                                     <  2:538665/58‑1 (MQ=255)                                                                                                                                                                                                      gCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAAc                                                                                                                                                       >  2:217630/1‑102 (MQ=255)                                                                                                                                                                                                          ggAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGtt                                                                                                                                                   <  1:217632/102‑1 (MQ=255)                                                                                                                                                                                                                                acacGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATc                                                                                                         >  2:166340/1‑122 (MQ=255)                                                                                                                                                                                                                                    gTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACa                                                                                                     <  1:166341/122‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                      AAGCGACACGGCAAACCACCCATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAACCAATGGGCTGACGACTTACCCCAACTGCTTACGCGCATTGCGGAAAATGCGCATCCATGGGCCATCCTCGCCCCAGTTTTCCGGATGCCAGGAGTTGCTGACAGTACGGAAAACACGTTCCGGGTGCGGCATCATAATGGTGACTCGACCACTTTCAGTCGTGACTGCCGTAATACCGTTCGGTGAACCGTTCGGGTTAGCCGGGTAGGTTTCAGTGACTTTGCCGAAGTTATCGACATAGCGCAGTGCCACCAGCCCTTTGCTTTCCAGTGCCGCCAGATGCGCCGCATCACGCACTTCCACGCGCCCTTCACCATGAGAGACAGCAATCGGCATT  >  CP009273/2684889‑2685336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.