New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2934061	23 (0.830)	6 (0.230)	6/260	NT	21.9%	coding (542/1101 nt)	rlmM	23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
	?	CP009273	= 2934240	21 (0.800)					coding (363/1101 nt)	rlmM	23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent

TGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTA  >  CP009273/2933845‑2934325                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                         tGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGtaaattaactgttccgctacgcgctgccttgcgcgatgccggggttctggggacggat                                                                                                                                                                                                                >  2:92044‑M1/1‑217 (MQ=255)   gccGGTATCCCTCAGACTTTGCGCCCGCGGGCCGTGGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAAc                                                                                                                                                                                                              <  1:152356/274‑1 (MQ=255)     cGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGtaaatttactgttccgctacgcgctgccttgcgcgatgccggggtgctggcg                                                                                                                                                                                                                      <  1:92044‑M1/265‑53 (MQ=255)                  aCTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATATCAGGCGCGGAACGCCCATATAGAAAGGCGAATTATTGTTGCTGTATGAGAAACCGGTATagcagcagc                                                                                                                                                                                               >  1:235794/1‑275 (MQ=255)                                                               gcgcTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCCCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATATCAGCAGCCTGGTGCAATAAAGAATACATTCACAACCGGACTCNCCggggcct                                                                                                                                                  >  2:211286/1‑270 (MQ=255)                                                                                  gTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGtaaatttactgttccgctacgcgctgccttgcgcgatgccggggtgctgg                                                                                                                                                                                                                        >  2:296179‑M1/1‑136 (MQ=255)                                                                                      aGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGtaaatttactgttccgctacgcgctgccttgcgcgatgccggggtgctggcgaa                                                                                                                                                                                                                    <  1:296183‑M1/186‑55 (MQ=255)                                                                                                          aaaTCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAg                                                                                                       <  1:211288/275‑1 (MQ=255)                                                                                                                  cGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGtaaatttactgttccgctacgcgctgccttgcgcgatgccggggtgctggcgaactatgaaacgc                                                                                                                                                                                                         >  1:26470‑M1/1‑104 (MQ=255)                                                                                                                      cacaTCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGtaaatttactgttccgctacgcgctgccttgcgcgatgccggggtgctggcgaactatgaaacgccgaa                                                                                                                                                                                                     <  2:26470‑M1/169‑70 (MQ=255)                                                                                                                      cacaTCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGt                                                                                                                                                                                                                 >  2:497551/1‑157 (MQ=255)                                                                                                                          tCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAAcc                                                                                                                                                                                                             <  1:497558/157‑1 (MQ=255)                                                                                                                               ttCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCg                                                                                                                                                                                                            >  2:35846/1‑153 (MQ=255)                                                                                                                                   ccAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGtat                                                                                                                                                                                                        <  1:35846/153‑1 (MQ=255)                                                                                                                                                     cATCCGCAGGAATAAACACATGAAATACCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTgg                                                                                                                                                                                           >  1:369867/1‑148 (MQ=255)                                                                                                                                                         cGCAGGAATAAACACATGAAATGCCTCTTCCAGTGTGAGCGTGGAACGGCGCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCa                                                                                                                                                                                       <  2:369862/148‑1 (MQ=255)                                                                                                                                                                        aTGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGgcgc                                                                                                                                                                                                                                                            >  1:263267/1‑64 (MQ=255)                                                                                                                                                                            aaTGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGaa                                                                                                                                                                                                                                                        <  2:263265/64‑1 (MQ=255)                                                                                                                                                                                ccTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATa                                                                                                                                                                             >  1:435435/1‑135 (MQ=255)                                                                                                                                                                                    ttCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATg                                                                                                                                                                         <  2:435428/135‑1 (MQ=255)                                                                                                                                                                                    ttCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGcc                                                                                                                                       >  2:442219/1‑169 (MQ=255)                                                                                                                                                                                        aGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCa                                                                                                                                   <  1:442226/169‑1 (MQ=255)                                                                                                                                                                                          tttGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAAt                                                                                                                                                                                     >  1:168428/1‑117 (MQ=255)                                                                                                                                                                                            tGAGCGTGGAACGACTCGGCGCATCTGCCGGAAAttt                                                                                                                                                                                                                                                                   >  1:90750/1‑37 (MQ=255)                                                                                                                                                                                            tGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCg                                                                                                                                                                                                            >  2:127835/1‑92 (MQ=255)                                                                                                                                                                                              aGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAg                                                                                                                                                                                 <  2:168427/117‑1 (MQ=255)                                                                                                                                                                                                cGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAgg                                                                                                                                                                                                                                                               <  2:90750/37‑1 (MQ=255)                                                                                                                                                                                                cGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGtat                                                                                                                                                                                                        <  1:127836/92‑1 (MQ=255)                                                                                                                                                                                                               cgcATCTGCAGGTAATTTCTGCCGCGGACTGCCCATATAGTACGGCGAATTAACGTTGCTGTCTGCGGAACCGGTATAGCAGCAGCATGGCGCAGTACCGCATACATGCACAACCGGAAGCTTCGGCGTTTCATAGTTAGACAGCACCACGGCATCGCGCAAGGCAGCGCGTAGCGGAACCGTAAATTTAAGGCAAAAGTTCAGTAACTCTTGGCTTTCAGTGGTAACGGCAACTTCAACAGGCAGTACACCGGCCTGCTCCACGACGCCATGtc  >  2:110845/1‑274 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                         TGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGCCGCCAGGGCAAGCGCCTAAATCCACCGCCCACATCCCGTTCGCCAGGCGTTCATCCCACTCATCCGCAGGAATAAACACATGAAATGCCTCTTCCAGTTTGAGCGTGGAACGACTCGGCGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTA  >  CP009273/2933845‑2934325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.