New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2934061	23 (0.830)	6 (0.230)	6/260	NT	21.9%	coding (542/1101 nt)	rlmM	23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent
	?	CP009273	= 2934240	21 (0.800)					coding (363/1101 nt)	rlmM	23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent

CGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGGGGGTAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAG  >  CP009273/2934051‑2934457                                                                                                                                                                                              |                                                                                                                                                                                                                          cgcATCTGCAGGTAATTTCTGCCGCGGACTGCCCATATAGTACGGCGAATTAACGTTGCTGTCTGCGGAACCGGTATAGCAGCAGCATGGCGCAGTACCGCATACATGCACAACCGGAAGCTTCGGCGTTTCATAGTTAGACAGCACCACGGCATCGCGCAAGGCAGCGCGTAGCGGAACCGTAAATTTAAGGCAAAAGTTCAGTAACTCTTGGCTTTCAGTGGTAACGGCAACTTCAACAGGCAGTACACCGGCCTGCTCCACGACGCCATGtc                                                                                                                                      >  2:110845/1‑274 (MQ=255)                                cccATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCtt                                                                                                                                                                                                >  1:49117/1‑186 (MQ=255)                                    tataGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGt                                                                                                                                                                                            <  2:49117/186‑1 (MQ=255)                                              cGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACGTGCCGACAAt                                                                                                                         <  1:554748/243‑1 (MQ=255)                                              cGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCAGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACa                                                                                                                                   >  1:128674/1‑233 (MQ=255)                                                  ttattGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCAGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGcc                                                                                                                               <  2:128673/233‑1 (MQ=255)                                                                                    agcCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACCCGCAGTTCAc                                                                                                                                                              >  2:428440/1‑168 (MQ=255)                                                                                     gcCTGGTGCAATAAAGAATACATGCAGAACCGGATGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCACTTCTCTACTACNCCCTGTAANATGCCGACAATGGGGGTAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTAGCGGCCaaaaa                                                  >  1:378008/1‑275 (MQ=255)                                                                                     gcCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTAt                                                                                                                                                                                      >  2:337466/1‑143 (MQ=255)                                                                                     gcCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTc                                                                                                                                                                >  2:80602/1‑165 (MQ=255)                                                                                        tGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGcc                                                                                                                                                          <  1:428447/168‑1 (MQ=255)                                                                                         ggTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGc                                                                                                                                                                                  <  1:337471/143‑1 (MQ=255)                                                                                         ggTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCg                                                                                                                                                            <  1:80602/165‑1 (MQ=255)                                                                                                                     gACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTctct                                                                                                                                                   >  2:99846/1‑146 (MQ=255)                                                                                                                     gACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTctac                                                                                                                                                 >  1:507425/1‑148 (MQ=255)                                                                                                                      aCGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTc                                                                                                                                                                            >  1:514051/1‑120 (MQ=255)                                                                                                                       cGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAaca                                                                                                                                                                        >  2:471000/1‑123 (MQ=255)                                                                                                                         cTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTctacta                                                                                                                                               <  1:99846/146‑1 (MQ=255)                                                                                                                         cTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACg                                                                                                                                             <  2:507418/148‑1 (MQ=255)                                                                                                                          ttCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTAcggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttattcctgcggatgagtgggatgaacgcctggcgaacgggatgtg                                                                                                                       <  2:26470‑M2/169‑101 (MQ=255)                                                                                                                          ttCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAaca                                                                                                                                                                        <  2:514044/120‑1 (MQ=255)                                                                                                                           tCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCa                                                                                                                                                                    <  1:471007/123‑1 (MQ=255)                                                                                                                              gCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTAcggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttattcctgcggatgagtgggatgaacgcctggcgaacgggatgtgggcg                                                                                                                   >  1:26470‑M2/1‑65 (MQ=255)                                                                                                                                     atccgtccccaGAACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTTAATTTAcggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttattcctgcggatgagtgggatgaacgcctggcgaacgggatgtgggcggtggatttaggcgcttgccctggcggctggacctaccaactggtgaagcgcaacatgtgggtttattccgtcgacaacggcccgatggcgcaaagtctgatggataccggaca  >  2:92044‑M2/6‑58 (MQ=255)                                                                                                                                         ttCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTAcggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttattcctgcggatgagtgggatgaacgcctggcgaacgggatgtgggcggtggatttaggcgcttgccctggcggct                                                                                       <  1:296183‑M2/186‑133 (MQ=255)                                                                                                                                           cGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTAcggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttattcctgcggatgagtgggatgaacgcctggcgaacgggatgtgggcggtggatttaggcgcttgccctggcggctggacctaccaactggtgaagcgcaacatgtgggtttattccgtcgacaacggcccgatggcgcaaagtctgatggataccg      <  1:92044‑M2/265‑214 (MQ=255)                                                                                                                                             ccAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTAcggcagatgcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttattcctgcggatgagtgggatgaacgcctggcgaacgggatgtgggcggtggatttaggcgcttgccctggcggctggac                                                                                   >  2:296179‑M2/1‑50 (MQ=255)                                                                                                                                                                                              |                                                                                                                                                                                                                          CGCATCTGCCGGAAATTTCAGGCGCGGAATGCCCATATAGAACGGCGAATTATTGTTGCTGTATGAGTAACCGGTATAGCAGCAGCCTGGTGCAATAAAGAATACATGCACAACCGGACGCTTCGGCGTTTCATAGTTCGCCAGCACCCCGGCATCGCGCAAGGCAGCGCGTAGCGGAACAGTAAATTTACGGCAGAATTTCAGTAACTCTTTGCTTTCGTTGGTATCGGCAACTTCAACACGCAGTTCACCGCCCTTCTCTACTACGCCCTGTAACATGCCGACAATGGGGGTAATACGATCTTCTGGCGGCAAATGCTGCAGGAGTTCCCCCACCACAAACCACTGGCGGGCAAAAATTAATGAACTGAACGGCAGCTCACGGATTAACTTATCGCCATCATCAG  >  CP009273/2934051‑2934457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.