New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3295917 =	34 (1.230)	4 (0.150)	3/262	NT	8.6%	coding (70/879 nt)	yhbV	U32 peptidase family protein
	?	CP009273	3296701 =	53 (2.010)					coding (854/879 nt)	yhbV	U32 peptidase family protein

TTGTAAGGCCGATCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCGTGGTGAATATGTGCGCTGAACGCA  >  CP009273/3295725‑3296166                                                                                                                                                                                                 |                                                                                                                                                                                                                                                          ttGTAAGGCCGATCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTAGGGGCGATGTCCGAAGACACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGCGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGAAGTGATTTATCTTGGTGAAGCGGAAAGCAGCAAGCGTCGGGCAACCAAAGTAGGCGActgct                                                                                                                                                                          >  1:60040/1‑272 (MQ=255)           gATCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGTAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCtt                                                                                                                                                                                                                           >  1:179151/1‑215 (MQ=255)            aTCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTAt                                                                                                                                                                                                              >  1:187703/1‑227 (MQ=255)            aTCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGaaa                                                                                                                                                              >  1:91027/1‑275 (MQ=255)            aTCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAAGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGACTCCGGCAACCAAAGTGGGCGACTGGCGGGCGATGGCaa                                                                                                                                                              >  2:556674/1‑275 (MQ=255)            aTCCGCAAAACTTTGTACAGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCAACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAACGTTGGAGAATGGCTGGAGATGGaaa                                                                                                                                                              >  1:351634/1‑275 (MQ=255)                                                                                    gaatggtcccacatCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTgg                                                                                      <  2:91027/263‑1 (MQ=255)                                                                                              atatCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGcc                                                                                                                                                   >  2:97368/1‑204 (MQ=255)                                                                                               tatCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACcagc                                                                                                                                                                                                                                                >  1:490620/1‑110 (MQ=255)                                                                                                  cACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGa                                                                                                                                               <  1:97368/204‑1 (MQ=255)                                                                                                   aCCATAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAgcg                                                                                                                                                                                                                                            <  2:490613/110‑1 (MQ=255)                                                                                                                 tGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGcca                                                                                                                                                                                                                                                     >  1:319974/1‑87 (MQ=255)                                                                                                                     aaaaGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACcag                                                                                                                                                                                                                                                 <  2:319969/87‑1 (MQ=255)                                                                                                                                   atTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGcc                                       >  1:44046/1‑275 (MQ=255)                                                                                                                                          aGGGCCAGTGCTTTGGTACTTGCC‑CAAGAGACGCTGAAAGAATTTTATCAGCACGCCTCCACCAGCAGACGCGACGTGATGTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATAGCTCGCCGGGCGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGGGCAGGCATCATCTGAACTGGGCGAAATGAAAAGTCATGTTGAGAAGGGGGCGATGTTGATTGAATCCAGCgttgc                               >  2:561064/1‑271 (MQ=255)                                                                                                                                              ccAGTGCTGTGGTAATGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTCTCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCgg                            <  1:556682/275‑1 (MQ=255)                                                                                                                                                 gTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGc                                                                                                                                                                                                                   >  1:517609/1‑89 (MQ=255)                                                                                                                                                 gTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAAc                                                                                >  2:194080/1‑220 (MQ=255)                                                                                                                                                 gTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGaaa                                                                           >  2:534628/1‑225 (MQ=255)                                                                                                                                                     tgtgGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTa                                                                                                                                                                                                               <  2:517601/89‑1 (MQ=255)                                                                                                                                                     tgtgGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGaa                                                                            <  1:194082/220‑1 (MQ=255)                                                                                                                                                     tgtgGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCt                                                                       <  1:534636/225‑1 (MQ=255)                                                                                                                                                         agtgagctatttacttaggcttgcagctccagtcctgccaGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAAtcgctcg                                                                                                                                                     <  1:307531‑M1/103‑1 (MQ=255)                                                                                                                                                         agtgagctatttacttaggcttgcagctccagtcctgccaGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGt                                                                                                                                          <  1:179751‑M1/114‑1 (MQ=255)                                                                                                                                                            ctcgCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCCACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCAGGGAGTGGTAAGCAGATTATGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACACTATGTTGAGAACGGTGAGTGTCTGAGTGAAGACAGCGATCTCGACGTGGTGCatgtcc              >  2:546953/4‑271 (MQ=255)                                                                                                                                                            cTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGActggc                                                                                                                                                                          >  2:102030/1‑119 (MQ=255)                                                                                                                                                            cTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCGTGGTGACTAtg               >  1:104541/1‑274 (MQ=255)                                                                                                                                                             agctatttacttaggcttgcagctccagtcctgccaGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCgg                                                                                                                                                 >  2:307527‑M1/37‑143 (MQ=255)                                                                                                                                                             agctatttacttaggcttgcagctccagtcctgccaGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGc                                                                                                                                      >  2:179750‑M1/37‑154 (MQ=255)                                                                                                                                                              ggCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGa                                                                                                                                               >  1:90403/1‑144 (MQ=255)                                                                                                                                                               gCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGcc                                                                                                                                                   >  2:42110/1‑139 (MQ=255)                                                                                                                                                               gCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGAt                                                                                                                                  >  1:475115/1‑156 (MQ=255)                                                                                                                                                                ccAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGga                                                                                                                                                                      <  1:102030/119‑1 (MQ=255)                                                                                                                                                                ccAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCg                          <  1:546961/259‑1 (MQ=255)                                                                                                                                                                  aaaaGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTgg                                                                                                                                           <  2:90403/144‑1 (MQ=255)                                                                                                                                                                   aaaGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGa                                                                                                                                               <  1:42110/139‑1 (MQ=255)                                                                                                                                                                   aaaGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATtgtg                                                                                                                              <  2:475108/156‑1 (MQ=255)                                                                                                                                                                         aCGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCGTGGTGAATATGTGCGCTGAACGCa  >  1:127828/1‑274 (MQ=255)                                                                                                                                                                                                 |                                                                                                                                                                                                                                                          TTGTAAGGCCGATCCGCAAAACTTTGTACCGCAAAGCGCGTGGATGGAGACGCTCGGGTCGATGTCCGAAGGCACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGTGAAGCGGTATGCAGCAAGCGTCGGGCAACCAAAGTTGGCGACTGGCTGGAGATGGCAAAATCGCTCGCCGGGAGTGGTAAGCAGATTGTGCTCTCCACGCTGGCGCTGGTGCAGGCATCATCTGAACTGGGCGAACTGAAACGCTATGTTGAGAACGGTGAGTTTCTGATTGAAGCCAGCGATCTCGGCGTGGTGAATATGTGCGCTGAACGCA  >  CP009273/3295725‑3296166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.