New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3921394	24 (0.870)	4 (0.150)	4/260	NT	16.1%	coding (880/993 nt)	asnA	asparagine synthetase A
	?	CP009273	= 3921515	19 (0.730)					coding (1449/1452 nt)	viaA	stimulator of RavA ATPase activity; von Willebrand factor domain protein

CGCCACGACGTGCGCGCACCGGATTATGATGACTGGAGCACCCCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT  >  CP009273/3921142‑3921589                                                                                                                                                                                                                                                             |                                                                                                                                                                                                    cGCCACGACGTGCGCGCACCGGATTATGATGACTGGAGCACCCCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGACGACACGCTGAAGCATCAACTGGCCCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGATGCTGCGCGGTGGAATGGCGGAGACCAACGGCGGCGGTAGCGGCAAGCCTCggtct                                                                                                                                                                                 >  2:482419/1‑269 (MQ=255)     acgacgTGCGCGCACCGGATTATGATGACTGGAGCACCCCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGNAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTa                                                                                                                                                                                                  <  1:482426/252‑1 (MQ=255)                                aCTGGCGCACACCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCAATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGCGCGCTCCTCCATGGGGATCCGTGGAGCTGCCGACACGCTGAAGCATCAACTGGGCCTGACCGGTCACGCAGATCGCCTGGAGCGGGAGTGGCAGCAGGCGCCGCCGAGCGGGGAAATGCCGCAGAAGACCAGCGGCGGTATCGGCCAGGAACGGGTGACGATGCGGCTGCTGCCAGcgccgccggtggg                                                                                                                                                 >  2:78166/1‑267 (MQ=255)                                            cGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTATATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGCAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGCCCATCGGCGGCGGTATCGCCCCGACGCTGTTGACTATGCCGCTGCTGCACCTCCCGCCTATcctcaagttcaatg                                                                                                                                      >  2:400442/1‑260 (MQ=255)                                              tCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGTAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTAtgct                                                                                                                                                                         <  1:300327/236‑1 (MQ=255)                                                                           cGAGATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCAAGCTGCTGTTCGCGAGAGCg                                                                                                     >  1:177442/1‑275 (MQ=255)                                                                                          gAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGc                                                                                                                                                                                             >  1:249768/1‑172 (MQ=255)                                                                                              ccGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGt                                                                                                                                                                                         <  2:249766/172‑1 (MQ=255)                                                                                                                  tGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGc                                                                                                                                                                                             >  1:2402/1‑148 (MQ=255)                                                                                                                      cTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGt                                                                                                                                                                                         <  2:2402/148‑1 (MQ=255)                                                                                                                                   ggATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTg                                                                                                                                                                                 >  1:265512/1‑143 (MQ=255)                                                                                                                                   ggAACCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCGGCGGCGCGGTGAACGGCCGGAAACCATCGGCGGCGCTATCGGCCAGTCTCGGTTGACTGTGCTGCTGCCGCAACTGCCGCATAACGCCCAGGTTCCGTGTGGAGTATGGCCAGCTGATGTTCGCGAGAGCGTCCCCTCTCGGCTGTAAAAATTTAGCGCCTCCCGCGCCGGATCAGGTGCCGTCGct                                             >  2:239901/1‑274 (MQ=255)                                                                                                                                      tCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCACCTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGGAAGAATTTATCGCCGCCAGCGGCTGAGCAgtcggcggtgcggg                                           >  2:99417/1‑266 (MQ=255)                                                                                                                                       ccGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTa                                                                                                                                                                             <  2:265510/143‑1 (MQ=255)                                                                                                                                       agatggaGATGCGGAAGCGCTGAAGAATCCACTGGCGCTGACCGGTGTCTAAGATGGCCGTGAGCTGGAGTGGCTGCAGTCGCTGATGCGCGGGGAAATGCCGCAGACCATCGGCGGCGGTACCGGCCAGTCTGGTTTGACGATGCTGCTGCTGCAACCGGCGCATATCGGAGAGGTTCAGAGTGGAGTATGGCCCGCTGCTGTTCGCGAGAGCGTCCCTGCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATcc                                          <  2:177441/268‑1 (MQ=255)                                                                                                                                                                          cgcTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCGGCGCGGTGAAATGCCGCAGCCCATCGGCGGCGGTAGCGGCCAGTCTCGTTGGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGCGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCa      <  1:239903/275‑1 (MQ=255)                                                                                                                                                                               aCCGGTGACGAAGGTCGCCTGGAGGTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGCCCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat  <  1:99417/274‑1 (MQ=255)                                                                                                                                                                                     gACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGGGAAATGCCGCAGACCATCGGCGGCGataaattattacagcagagaagggacgctctcgcgaacagcagctggccatactccacactgaacctggccgatatgcggcagttgcagcagcagcatagtcaaac                                                                                           >  1:546382‑M1/1‑73 (MQ=255)                                                                                                                                                                                         aaGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGataaattattacagcagagaagggacgctctcgcgaacagcagctggccatactccacactgaacctggccgatatgcggcagttgcagcagcagcatagtcaaacgaga                                                                                       <  2:546374‑M1/179‑111 (MQ=255)                                                                                                                                                                                              cGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAAc                                                                                                                                                              >  2:334207/1‑103 (MQ=255)                                                                                                                                                                                                  tggagctggagTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGcc                                                                                                                                                          <  1:334212/103‑1 (MQ=255)                                                                                                                                                                                                               gCATCAGGCGCTGCTGCGCGGTGAAATTCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGata                      >  1:335742/1‑222 (MQ=255)                                                                                                                                                                                                               gCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGc                                                                                                                                                        >  2:105778/1‑92 (MQ=255)                                                                                                                                                                                                                   cAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCatat                                                                                                                                                    <  1:105778/92‑1 (MQ=255)                                                                                                                                                                                                                   cAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGAt                  <  2:335737/222‑1 (MQ=255)                                                                                                                                                                                                                         ctgctgCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCaa                                 >  2:291374/1‑201 (MQ=255)                                                                                                                                                                                                                           gctgcGCGGTGAAATGCCGCAGACCATCGGCGGCGataaattattacagcagagaagggacgctctcgc                                                                                                                                                                   >  1:255985‑M1/1‑35 (MQ=255)                                                                                                                                                                                                                             tgcGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg                             <  1:291378/201‑1 (MQ=255)                                                                                                                                                                                                                               cgcgGTGAAATGCCGCAGACCATCGGCGGCGataaattattacagcagagaagggacgctctcgcgaac                                                                                                                                                               <  2:255983‑M1/69‑39 (MQ=255)                                                                                                                                                                                                                                                       ggcggcGataaattattacagcagagaagggacgctctcgcgaacagcagctggccatactccacactgaacctggccg                                                                                                                             >  1:441349‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                                           gcgataaattattacagcagagaagggacgctctcgcgaacagcagctggccatactccacactgaacctggccgatat                                                                                                                         <  2:441342‑M1/79‑77 (MQ=255)                                                                                                                                                                                                                                                             |                                                                                                                                                                                                    CGCCACGACGTGCGCGCACCGGATTATGATGACTGGAGCACCCCGTCAGAGCTGGGCCATGCGGGTCTGAACGGCGATATTCTGGTGTGGAACCCGGTACTGGAAGATGCGTTTGAGCTTTCCTCCATGGGGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT  >  CP009273/3921142‑3921589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.