New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3921394	24 (0.870)	4 (0.150)	4/260	NT	16.1%	coding (880/993 nt)	asnA	asparagine synthetase A
	?	CP009273	= 3921515	19 (0.730)					coding (1449/1452 nt)	viaA	stimulator of RavA ATPase activity; von Willebrand factor domain protein

GGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAG  >  CP009273/3921272‑3921749                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                           ggAACCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCGGCGGCGCGGTGAACGGCCGGAAACCATCGGCGGCGCTATCGGCCAGTCTCGGTTGACTGTGCTGCTGCCGCAACTGCCGCATAACGCCCAGGTTCCGTGTGGAGTATGGCCAGCTGATGTTCGCGAGAGCGTCCCCTCTCGGCTGTAAAAATTTAGCGCCTCCCGCGCCGGATCAGGTGCCGTCGct                                                                                                                                                                                                             >  2:239901/1‑274 (MQ=255)    tCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCACCTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGGAAGAATTTATCGCCGCCAGCGGCTGAGCAgtcggcggtgcggg                                                                                                                                                                                                           >  2:99417/1‑266 (MQ=255)     agatggaGATGCGGAAGCGCTGAAGAATCCACTGGCGCTGACCGGTGTCTAAGATGGCCGTGAGCTGGAGTGGCTGCAGTCGCTGATGCGCGGGGAAATGCCGCAGACCATCGGCGGCGGTACCGGCCAGTCTGGTTTGACGATGCTGCTGCTGCAACCGGCGCATATCGGAGAGGTTCAGAGTGGAGTATGGCCCGCTGCTGTTCGCGAGAGCGTCCCTGCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATcc                                                                                                                                                                                                          <  2:177441/268‑1 (MQ=255)                                        cgcTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCGGCGCGGTGAAATGCCGCAGCCCATCGGCGGCGGTAGCGGCCAGTCTCGTTGGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGCGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCa                                                                                                                                                                      <  1:239903/275‑1 (MQ=255)                                             aCCGGTGACGAAGGTCGCCTGGAGGTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGCCCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat                                                                                                                                                                  <  1:99417/274‑1 (MQ=255)                                                                             gCATCAGGCGCTGCTGCGCGGTGAAATTCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGata                                                                                                                                                                                      >  1:335742/1‑222 (MQ=255)                                                                                 cAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGAt                                                                                                                                                                                  <  2:335737/222‑1 (MQ=255)                                                                                       ctgctgCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCaa                                                                                                                                                                                                 >  2:291374/1‑201 (MQ=255)                                                                                           tgcGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg                                                                                                                                                                                             <  1:291378/201‑1 (MQ=255)                                                                                                                                       tctcGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagcagcgcctgatgccactccagctccaggcgatctt                                                                                                                                                                       <  2:546374‑M2/179‑70 (MQ=255)                                                                                                                                           gTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttccccgcgcagcagcgcctgatgccactccagctccaggcgatcttcgtc                                                                                                                                                                   >  1:546382‑M2/1‑106 (MQ=255)                                                                                                                                                               cAACTTCTGCATATCTGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGGCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCa                                               <  1:78166/275‑1 (MQ=255)                                                                                                                                                                      cGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCt                                                                                                       >  1:461004/1‑212 (MQ=255)                                                                                                                                                                         atatCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgc                                                                                                                                                                                                                                         <  2:441342‑M2/79‑4 (MQ=255)                                                                                                                                                                          tatCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTTTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAg                                                                                                   <  2:460997/212‑1 (MQ=255)                                                                                                                                                                             cGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgcc                                                                                                                                                                                                                                     >  1:441349‑M2/1‑72 (MQ=255)                                                                                                                                                                                    gTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatg                                                                                                                                                                    >  2:433665/1‑137 (MQ=255)                                                                                                                                                                                        aGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGc                                                                                                                                                                <  1:433672/137‑1 (MQ=255)                                                                                                                                                                                                      ccAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAANAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCNTCGNATCCCGGTa                                                                                                                                                                                                     >  2:164630/1‑86 (MQ=255)                                                                                                                                                                                                          ctgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCaa                                                                                                                                                                                                 <  1:164631/86‑1 (MQ=255)                                                                                                                                                                                                             ctgTTCGCACGTGCATCCCTTTGGTGCTGTAAGAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAg  <  1:266209/274‑1 (MQ=255)                                                                                                                                                                                                               gTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcg                                                                                                                                                                                                             <  2:255983‑M2/69‑32 (MQ=255)                                                                                                                                                                                                                   gcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATcgccgccgatggtctgcggcatttcaccgcgcagc                                                                                                                                                                                                         >  1:255985‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                                          taataaTTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCNCTGAg                                                          >  1:444243/1‑189 (MQ=255)                                                                                                                                                                                                                                              aatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGAt                                                      <  2:444236/189‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                           GGATCCGTGTAGATGCCGACACGCTGAAGCATCAACTGGCGCTGACCGGTGACGAAGATCGCCTGGAGCTGGAGTGGCATCAGGCGCTGCTGCGCGGTGAAATGCCGCAGACCATCGGCGGCGGTATCGGCCAGTCTCGTTTGACTATGCTGCTGCTGCAACTGCCGCATATCGGCCAGGTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAG  >  CP009273/3921272‑3921749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.