New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	77122 =	72 (1.870)	8 (0.220)	7/292	NT	11.3%	coding (230/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit
	?	CP009273	77244 =	59 (1.650)					coding (108/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit

CGAAAACGAAACCCCACTGTTATATATCGACCGCCACCTGGTGCATGAAGTGACCTCACCGCAGGCGTTCGATGGTCTGCGCGCCCACGGTCGCCCGGTACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTGCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/77298‑77122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcggtgaGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGG  >  CP009273/77244‑77510                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGAAAACGAAACCCCACTGTTATATATCGACCGCCACCTGGTGCATGAAGTGACCTCACCGCAGGCGTTCGATGGTCTGCGCGCCCACGGTCGCCCGGTACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTGCGGT                                                                                                                                                                                                                                                                               <  1:379093/175‑1                              ACCGCCACCTGGTGCATGAAGTGACCTCACCGCAGGCGTTCGATGGTCTGCGCGCCCACGGTCGCCCGGTACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATG                                                                                                                                                                                                                                                                                       >  2:517809/1‑138                                  CCACCTGGTGCATGAAGTGACCTCACCGCAGGCGTTCGATGGTCTGCGCGCCCACGGTCGCCCGGTACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTG                                                                                                                                                                                                                                                                                   <  1:517816/138‑1                                                                                          GTCGCCCGGTACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTA                                                                                  >  1:262260/1‑275                                                                                                   TACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAAC                                                                                                                                                                                           >  1:367605/1‑161                                                                                                       TCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATT                                                                                                                                                                                       <  2:367599/161‑1                                                                                                             GGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCATCG‑‑‑‑‑AACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATA                                                                                                                                          >  1:572139/1‑195                                                                                                                 AAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCATCG‑‑‑‑‑AACGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGG                                                                                                                                      <  2:572130/195‑1                                                                                                                          cCTACCATGCCTCACAACGTCTCTACCCATACCAAAGACATTAATGTCTGCGATGAGGTTACTTCAGGCACCAGGTGGCGGCCGATACATAACAGTGGGGTTTCGATTTCGGCGTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACAAACCTTCTGCTACATAGCGGGCAATGATATCGCCCATGTCATCGATACTAACGGCGGCAGCTCCACGGGGGAATTCCACGCGCCGAATGCCTTCTTCTAccacg                                                  >  2:218207/2‑270                                                                                                                                             TCTCTACCCAGACCAAAGACATTAATGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAA                                                                                                                                                                                            >  2:357201/1‑118                                                                                                                                                 TACCCAGACCAAAGACATTAATGCCTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAAT                                                                                                                                                                                        <  1:357207/118‑1                                                                                                                                                                         CTGCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCTCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTACTGCGCGGTTAATGGCGCGTTCCATTGCGCAAGCCGCATCCTCCGCATCCA    >  1:10268/1‑274                                                                                                                                                                           GCGGTGAGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCCCGGGCTAAATCCCCGGTGCGAATGCCTTGTTCGAATGACCGGTTACTGTCGCGTTCCATGGCGCACGCCCACTCACTGGCATCCAGG  >  1:153145/1‑274                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGAAAACGAAACCCCACTGTTATATATCGACCGCCACCTGGTGCATGAAGTGACCTCACCGCAGGCGTTCGATGGTCTGCGCGCCCACGGTCGCCCGGTACGTCAGCCGGGCAAAACCTTCGCTACCATGGATCACAACGTCTCTACCCAGACCAAAGACATTAATGCCTGCGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/77298‑77122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcggtgaGGTCACTTCATGCACCAGGTGGCGGTCGATATATAACAGTGGGGTTTCGTTTTCGGCTTCGTACACAACGTGAGCGTCGAACAATTTTTCGTATAACGTCTTAGCCATGATTACACCCCTTCTGCTACATAGCGGGCAATGATATCGCCCATTTCATCGGTACTAACGGCGGCAGCGCCACGGGCTAAATCCCCGGTGCGAATGCCTTCTTCTAATGCGCGGTTAATGGCGCGTTCAATGGCGCAAGCCGCATCATCGGCATCCAGG  >  CP009273/77244‑77510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.