New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 1235328 = | 38 (0.990) | 4 (0.110) | 4/294 | NT | 12.4% | coding (994/1071 nt) | dadX | alanine racemase, catabolic, PLP‑binding |
? | CP009273 | 1236074 = | 21 (0.580) | coding (1454/1737 nt) | cvrA | putative cation/proton antiporter |
TCCATCCTTTTAATGGACACTATCATGGGCAATGGCTCTGTCACATTAACAACTACAGTTGCTGACCAGCCGGATGGATGATTTTTTTGCACCCAGAAGACGTTGCCTCCGATCCGGCTTACAACAAGTTACACCGTCACAACCGGGACGCGTAGCGCCAGCGCGCACATCAACTCATAGCCCACCGTTCCGGCAGCGGCGGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1235533‑1235328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcgacTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTTTGGCATATGCAAATCGCGCAGTGCCGC > CP009273/1236074‑1236240 TCCATCCTTTTAATGGACACTATCATGGGCAATGGCTCTGTCACATTAACAACTACAGTTGCTGACCAGCCGGATGGATGATTTTTTTGCACCCAGAAGACGTTGCCTCCGATCCGGCTTACAACAAGTTACACCGTCACAACCGGGACGCGTAGCGCCAGCGCGCACATCAACGCATAGCCCACCGTTCCGGCAGCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATCACACACAACACAACGCCT > 1:239944/1‑272 AATGGCTCTGTCACATTAACAACTACAGTTGCTGACCAGCCGGATGGATGATTTTTTTGCACCCAGAAGACGTTGCCTCCGATCCGGCTTACAACAAGTTACACCGTCACAACCGGGACGCGTAGCGCCAGCGCGCACATCAACTCATAGCCCACCGTTCCGGCCGCGGCGGCCACTGGCTGCACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACAAATCGCCTTCGCGCAGTCGGGGGCGGCCGGgggggtggag > 2:183464/1‑264 GTCACATTAACAACTACAGTTGCTGACCAGCCGGATGGATGATTTTTTTGCACCCAGAAGACGTTGCCTCCGATCCGGCTTACAACAAGTTACACCGTCACAACCGGGACGCGTAGCGCCAGCGCGCACATCAACTCATAGCCCACCGTTCCGGCAGCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTA < 1:183467/275‑1 aacagtcACAACACCAGTTGCTGCCCAGTCGTATGTATGATTTTTTTGCACCCAGAAGACGTGGCCTCCGATCCGGCTTACAACAAGTTACACCGTCACAACCGGGACGCGTAGCGCCAGCGCGCACATCAACTCATAGCCCACCGTTCCGGCAGCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGT < 2:239939/264‑1 GGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTTTGGCATATGCAAATCGCGCAGTG > 1:115025/1‑169 ACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTTTGGCATATGCAAATCGCGCAGTGCCGa < 2:115024/169‑2 TCCATCCTTTTAATGGACACTATCATGGGCAATGGCTCTGTCACATTAACAACTACAGTTGCTGACCAGCCGGATGGATGATTTTTTTGCACCCAGAAGACGTTGCCTCCGATCCGGCTTACAACAAGTTACACCGTCACAACCGGGACGCGTAGCGCCAGCGCGCACATCAACTCATAGCCCACCGTTCCGGCAGCGGCGGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1235533‑1235328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcggcgacTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAACACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTTTGGCATATGCAAATCGCGCAGTGCCGC > CP009273/1236074‑1236240 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |