New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1235328 =	38 (0.990)	4 (0.110)	4/294	NT	12.4%	coding (994/1071 nt)	dadX	alanine racemase, catabolic, PLP‑binding
	?	CP009273	1236074 =	21 (0.580)					coding (1454/1737 nt)	cvrA	putative cation/proton antiporter

GCGCGCGATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGCCGACGGTTATCCGCGCCACGCGCCTACCGGTACCCCTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTA  >  CP009273/1235109‑1235588                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                     gcgcgcGATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGCCGACGGTTATCCGCGCCACGCGCCTACCGGTACCCCTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCTGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGGTGAGCTGTGGAGCAAGGAGATCAAAATTGATGATGGCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGACGTGCGCGCTGgcggcacg                                                                                                                                                                                                               >  1:720753/1‑270 (MQ=255)       gATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGCCGACGGTTATCCGCGCCACGCGCCTACCGGTACCCCTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGGATTGGTACGCCGGTTGAGNTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCCATGAGTTGATTTGCGCGCTGGCGCTACGCGGccc                                                                                                                                                                                                         >  1:527339/1‑275 (MQ=255)                                      ggTACGCCGACGGTTATCCGCGCCACGCGCCTACCGGTACCCCTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTAcg                                                                                                                                                                                                               >  1:134978/1‑238 (MQ=255)                                                cGGTTATCCGCGCCACGCGCCTACCGGTACCCCTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGTGACCGTCTCGATGGATATGCTAGCGGTCGAGTTAACGCCTTGCCCGCAGTCGGCTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCAGCCGCTGCCGGaa                                                                                                                                                                                                                                                    >  1:370453/1‑191 (MQ=255)                                                     tcggcactgcgcgatttgcatatgccaaaagagacgcgtattgcggcactgtttcgtgataaccagttgcttcatcctaccggcagcacccgactgcgcgaaggcgatgtgttgtgtgtaattggtcgggaacgcgatcttccggcgctcggtaaactgttcagccaGt                                                                                                                                                                                                                                                                     <  2:115024‑M1/2‑1 (MQ=255)                                                         cactgcgcgatttgcatatgccaaaagagacgcgtattgcggcactgtttcgtgataaccagttgcttcatcctaccggcagcacccgactgcgcgaaggcgatgtgttgtgtgtaattggtcgggaacgcgatcttccggcgctcggtaaactgttcagccaGTcgcc                                                                                                                                                                                                                                                                 >  1:115025‑M1/164‑169 (MQ=255)                                                                              cccTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGTTGGGCTATGAGTTGATGTGNGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTTTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATcaaccat                                                                                                                                  >  1:528326/1‑275 (MQ=255)                                                                                           gACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAAATTGTTGTAAGCCGGATCGGAGGCAACGGCTGCTGGGTGCAAAAAAAACATCCAGCCGGCTGGGCAGc                                                                                                                     >  2:141177/1‑275 (MQ=255)                                                                                             cGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGCTCGGAGGCCACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGcca                                                                                                                   >  1:324382/1‑273 (MQ=255)                                                                                             cGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGAGGGCTATGAGTTGATTTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCTGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCa                                                                                                                    >  1:584084/1‑274 (MQ=255)                                                                                             cGGCGTGCGCACCATGACGGTGGGGACCGTCACGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGCTGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGAGTCCCGGTTGTATCGGTGTAACTTGTTGTAAGCCGGCTCGGGGGCACCGTCCTCTGGGGGCAAAAAAATCATCCATCCGGCTGGTCATCaa                                                                                                                   >  1:695524/1‑275 (MQ=255)                                                                                                   gcgcACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGGGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAAGCATCCATCCGGCTGGTCAGAAACTGTAg                                                                                                             >  1:336573/1‑275 (MQ=255)                                                                                                                taaccagttgcttcatcctaccggcagcacccgactgcgcgaaggcgatgtgttgtgtgtaattggtcgggaacgcgatcttccggcgctcggtaaactgttcagccaGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGAc                                                                                                <  1:183467‑M1/167‑1 (MQ=255)                                                                                                                 tGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGGTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGGGACGGTGTAACGTGTTGTAAGCCGGATCGGAGGCAACGGCTCATGGGGGCGAAAAAATCATCCATCCGGCTGGGGAGCAACTGTCGTTGTTTATGTGAcc                                                                                               >  2:660712/1‑274 (MQ=255)                                                                                                                  accagttgcttcatcctaccggcagcacccgactgcgcgaaggcgatgtgttgtgtgtaattggtcgggaacgcgatcttccggcgctcggtaaactgttcagccaGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCCACGTCTTCTGGGTGCAAAAAAATCATACATACGACTGGGCAGcaactggtgttgtgactgtt                                                                                                  <  2:239939‑M1/165‑8 (MQ=255)                                                                                                                       tgggcgcGATGGGTATGCTAGCGGTCGGGTTTACGCCTTGCGCGCAGGCGGGTATTGGTACGCCGGTTGGGCTGGGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGCCGTGCGCGCTTGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCa                                                                                         <  2:720743/269‑1 (MQ=255)                                                                                                                       ccGTCTCGATGGGTATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGTAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGCGACAGAGCCa                                                                                         <  1:717032/275‑1 (MQ=255)                                                                                                                         gtttcGATGGGTATGCTAGCGGTCGATTTAACGCCTTGCCCGGAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCACGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGGCGGCTATGAGTTTATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCAtt                                                                                       <  1:677255/272‑1 (MQ=255)                                                                                                                         gTCTTGATGGTTATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAANTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCAtt                                                                                       <  1:559827/275‑1 (MQ=255)                                                                                                                         gTCTCGCTGGATATGCTAGCGGTCGATTTATCGCCTTGCCCGCAGGCGGGTATTCGTACGCCGGTTGAGCTGTGGGGCACGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGCCAGAGCCAtt                                                                                       <  1:704264/275‑1 (MQ=255)                                                                                                                         gTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCAtt                                                                                       <  1:109814/275‑1 (MQ=255)                                                                                                                          tctcGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCAtt                                                                                       <  1:335439/274‑1 (MQ=255)                                                                                                                          tctcGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCAtt                                                                                       <  1:103787/274‑1 (MQ=255)                                                                                                                          ctccacccccccggccgcccccgactgcgcgaaggcgatttgttgtgtgtaattggtcgggaacgcgatcttccggcgctcggtaaactgtgcagccaGTGGCCGCCGCGGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCAtt                                                                                       >  2:183464‑M1/99‑274 (MQ=255)                                                                                                                               aTGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGGTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCTCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCGGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTCAAGGTGACAGAGCCATTGCCCa                                                                                  <  1:402526/274‑1 (MQ=255)                                                                                                                                       gCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTCCGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGNGTTGATGTGCTCGCGGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAgtgt                                                                         <  1:660721/275‑1 (MQ=255)                                                                                                                                            cGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACgg                                                                                                                                                                                                                                                 >  2:211116/1‑102 (MQ=255)                                                                                                                                            cGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACg                                                                                                                                                                                               >  1:267847/1‑152 (MQ=255)                                                                                                                                            cGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGCTGAGCTGTGGGGCAAGGAGACCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGGGGGCTATGAGTTGATGTCCGCGCTGGCTCTACGCGTCCCGGTTGTGACGGCGTCACTGCTTGTAAGCCGGGTCGGAGGCACCGTCTTCCGGGTGCAAAAAAATCATCAATACGGCTGGTCGGCAACCGTAGTAGGTGATGGGAAAGAGCCAATCCCCAttgtaccgtctt                                                                      >  2:607561/1‑262 (MQ=255)                                                                                                                                              gTCGATTTTACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTa                                                                   <  1:141178/274‑1 (MQ=255)                                                                                                                                              gTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCa                                                                                                                    >  1:246128/1‑225 (MQ=255)                                                                                                                                              gTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTAGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACNTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTaa                                                                  >  1:528299/1‑275 (MQ=255)                                                                                                                                                cGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTggg                                                                                                                                                                                                                                             <  1:211120/102‑1 (MQ=255)                                                                                                                                                cGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGgtgt                                                                                                                                                                                           <  2:267842/152‑1 (MQ=255)                                                                                                                                                  aTTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTg                                                                                                                <  2:246123/225‑1 (MQ=255)                                                                                                                                                          aggcgttgtgttgtgtgtgattggtcgggaacgcgatcttccggcgctcggtaaactgttcagccaGTCGCCGCCGCTGCCGGAACGGTGGGCTATGCGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGa                                                         >  1:239944‑M1/67‑272 (MQ=255)                                                                                                                                                                   cAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGNCTATGAGTNGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGCTAGTGTCGATTAAAAGGATGGACACTATTTcccc                                             <  1:482732/275‑1 (MQ=255)                                                                                                                                                                                    gCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGtctt                                                                                                                                                         >  1:79448/1‑150 (MQ=255)                                                                                                                                                                                        gTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTgg                                                                                                                                                     <  2:79447/150‑1 (MQ=255)                                                                                                                                                                                               tgtgGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCNGGTTGTGACGGTGTAACTTGATGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCTCGGCACCTGAACTCACCGCACAGGCGtt                  <  1:507859/274‑1 (MQ=255)                                                                                                                                                                                                gtgGGGCAAGGAGATCAAAATTGATGATGTcgccgccg                                                                                                                                                                                                                                                             >  1:120406/1‑38 (MQ=255)                                                                                                                                                                                                  ggggCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTAGGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCGATCCGGCTGGGCAGCAACTGTAGTTGGTCATGTGACAGCACCATAGCACATGACAGTTACCCTCAAACGGAGGGACACTATTGCCCCGGAACCTGCCCTACCGGCCCCGGCGTTCTag              >  2:12850/1‑274 (MQ=255)                                                                                                                                                                                                    ggCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGc                                                                                                                                                                                                                                                         <  2:120405/38‑1 (MQ=255)                                                                                                                                                                                                               cAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTNCCGGTGTANCTTGTTGTAAGCTGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGCACTCACCGCACAGGCGTTCTACATAAAacgctta  <  1:467863/274‑1 (MQ=255)                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                     GCGCGCGATGAACAGCGAATCGGCATTGTCGCCGCAGGGTACGCCGACGGTTATCCGCGCCACGCGCCTACCGGTACCCCTGTTTTAGTGGACGGCGTGCGCACCATGACGGTGGGGACCGTCTCGATGGATATGCTAGCGGTCGATTTAACGCCTTGCCCGCAGGCGGGTATTGGTACGCCGGTTGAGCTGTGGGGCAAGGAGATCAAAATTGATGATGTCGCCGCCGCTGCCGGAACGGTGGGCTATGAGTTGATGTGCGCGCTGGCGCTACGCGTCCCGGTTGTGACGGTGTAACTTGTTGTAAGCCGGATCGGAGGCAACGTCTTCTGGGTGCAAAAAAATCATCCATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTA  >  CP009273/1235109‑1235588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.