New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1798348	29 (0.750)	13 (0.360)	6/294	NT	19.1%	pseudogene (574/1476 nt)	arpB	pseudogene, ankyrin repeats
	?	CP009273	= 1798532	83 (2.310)					pseudogene (758/1476 nt)	arpB	pseudogene, ankyrin repeats

TTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1798068‑1798348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctattctgcGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCC  <  CP009273/1798532‑1798362                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTA                                                                                                                                                                                   >  1:138790/1‑275      TTTGTAGAATGATTGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCANTCAGTGTATGGACAATTAACTTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                              <  1:564675/275‑1                                                                                                                                                          CGTTGCCGTCAGAGACACCCACAGGACTGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGAAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCC                          <  1:409107/275‑1                                                                                                                                                                                            GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGTCAAATGGCATTGGTGATGCAATACCCGCGAAAATTGCCCCTGGAAC      >  2:7240/1‑261                                                                                                                                                                                            GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCC                                                                    >  1:25362/1‑199                                                                                                                                                                                            GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGC                                                                     >  1:344485/1‑198                                                                                                                                                                                            GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGC                                                                     >  1:523909/1‑198                                                                                                                                                                                            GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATG                                                                                                                                      >  2:532674/1‑133                                                                                                                                                                                            GGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTACTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGC                                                                     >  1:558382/1‑198                                                                                                                                                                                                TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCTATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                 <  2:344479/198‑1                                                                                                                                                                                                TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCTATGATTTCTTTTTCAGGGAGTATGGGCA                                                                                                                                  <  1:532682/133‑1                                                                                                                                                                                                TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGGGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCC  <  1:7240/261‑1                                                                                                                                                                                                TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                 <  2:523902/198‑1                                                                                                                                                                                                TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTACTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGAT                                                                 <  2:558373/198‑1                                                                                                                                                                                                TTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGATGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATG                                                                <  2:25362/199‑1                                                                                                                                                                                                                                                 GGCTGATAGATATGTTCGCAACTGTGCAATTGCTAT                                                                                                                                                                                  >  2:107604/1‑36                                                                                                                                                                                                                                                     GATAGATATGTTCGCAACTGTGCAATTGCTATTCTG                                                                                                                                                                              <  1:107605/36‑1                                                                                                                                                                                                                                                                                         CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAAC                                                                             >  2:707636/1‑97                                                                                                                                                                                                                                                                                         CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCT                                                                                            >  1:377865/1‑82                                                                                                                                                                                                                                                                                         CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAA                                                                                                                     >  2:239269/1‑57                                                                                                                                                                                                                                                                                         CGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATG                                                                                                                                      >  1:349848/1‑40                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1798068‑1798348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctattctgcGCAGTTATTATTTCAATGATTTCTTTTTCAGGGAGTATGGGCAACTGTTTGAATAATGTAATAAGCTGTTGAGACTGGCCTGTAGCCATTATTAACAACATTGCCGATGGATGTATAGGGGCAAATGGCATTCGTGATGCAATACCCGCGAAAATAGCCCCTGGAACTCCC  <  CP009273/1798532‑1798362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.