New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1798348	29 (0.750)	13 (0.360)	6/294	NT	19.1%	pseudogene (574/1476 nt)	arpB	pseudogene, ankyrin repeats
	?	CP009273	= 1798532	83 (2.310)					pseudogene (758/1476 nt)	arpB	pseudogene, ankyrin repeats

TGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGT  >  CP009273/1798075‑1798621                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                  tGTCCAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGcc                                                                                                                                                                                                                                                                                  <  2:138789/275‑1 (MQ=255)                                  taccccaTTTTATANATCGACAATACTACTTTGTCAGTAAGGTTACGAATAAATCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTAtttt                                                                                                                                                                                                                                                 <  2:535665/269‑1 (MQ=255)                                  tCCGCGATTTTATATATAGACAATCATAGTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTNCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTAtttt                                                                                                                                                                                                                                                 >  1:535673/1‑275 (MQ=255)                                    cgcgATTTTAAATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACTTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTCTTACCTGTGGGAGTTCCAGGGGCTATTTTc                                                                                                                                                                                                                                                >  1:711536/1‑274 (MQ=255)                                                   aGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGTCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTGCAGGTGCTAGTTTcgcgacagtttcatca                                                                                                                                                                                                                                 >  2:132456/1‑262 (MQ=255)                                                                tttacAGGAAGGCTACGAATTAAGCAGTCAGTGTATGGACAATTAAATTAGGTTGTTTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCGGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGc                                                                                                                                                                                                                   <  2:711526/271‑1 (MQ=255)                                                                               cGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATCAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTTTTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGTTATGGCATCACGCATGCCATTTGCCCCTATAccttcttc                                                                                                                                                                                                    >  2:288285/1‑268 (MQ=255)                                                                                           tcagtGTATGGACAATTAAATTATGTTGTGTCCGCTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCATGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCTATTGCTATTCTGNCCCTATTANCTGTGGGAGTTCCAGGTGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATgttgtt                                                                                                                                                                                        >  1:481451/1‑275 (MQ=255)                                                                                                 tATTGACAATTAATTTTTGTTTTGTCCGTTTACGACCCGAACGATACCAACTTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTaataat                                                                                                                                                                                  <  1:577634/275‑1 (MQ=255)                                                                                                         attaaattaTGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACa                                                                                                                                                                           >  1:411910/1‑274 (MQ=255)                                                                                                                      gtgtCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACa                                                                                                                                                             <  1:288290/275‑1 (MQ=255)                                                                                                                       tgtCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCAtt                                                                                                                                                                                                                      >  2:69503/1‑217 (MQ=255)                                                                                                                           cGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGcc                                                                                                                                                                                                                  <  1:69504/217‑1 (MQ=255)                                                                                                                                 cGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACat                                                                                                                                                  <  1:132457/275‑1 (MQ=255)                                                                                                                                                   cGTTGCCGTCAGAGACACCCACAGGACTGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGAAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgatggatgtataggggcaaatggcattcgtgatgcaataccc                                                                                                                                <  1:409107‑M1/275‑148 (MQ=255)                                                                                                                                                                               gCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGTTATTGCATCACGAATGc                                                                                                                                                                                                                          >  1:602206/1‑157 (MQ=255)                                                                                                                                                                                cACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGc                                                                                                                                                                                                                          >  2:100113/1‑156 (MQ=255)                                                                                                                                                                                   ggggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCAtt                                                                                                                                                                                                                      <  2:602197/157‑1 (MQ=255)                                                                                                                                                                                    gggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCAtt                                                                                                                                                                                                                      <  1:100114/156‑1 (MQ=255)                                                                                                                                                                                     ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgatggatgtatagggtcaaatggcattggtgatgcaatacccgcgaaaattgcccctggaac                                                                                                            >  2:7240‑M1/1‑94 (MQ=255)                                                                                                                                                                                     ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgcc                                                                                                                                                                          >  1:25362‑M1/1‑94 (MQ=255)                                                                                                                                                                                     ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgc                                                                                                                                                                           >  1:523909‑M1/1‑94 (MQ=255)                                                                                                                                                                                     ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgc                                                                                                                                                                           >  1:344485‑M1/1‑94 (MQ=255)                                                                                                                                                                                     ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatg                                                                                                                                                                                                                                            >  2:532674‑M1/1‑94 (MQ=255)                                                                                                                                                                                     ggCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTACTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgc                                                                                                                                                                           >  1:558382‑M1/1‑94 (MQ=255)                                                                                                                                                                                         ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCTATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgat                                                                                                                                                                       <  2:344479‑M1/198‑109 (MQ=255)                                                                                                                                                                                         ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttctatgatttctttttcagggagtatgggca                                                                                                                                                                                                                                        <  1:532682‑M1/133‑44 (MQ=255)                                                                                                                                                                                         ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggggtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgatggatgtataggggcaaatggcattcgtgatgcaatacccgcgaaaatagcccctggaactccc                                                                                                        <  1:7240‑M1/261‑172 (MQ=255)                                                                                                                                                                                         ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgat                                                                                                                                                                       <  2:523902‑M1/198‑109 (MQ=255)                                                                                                                                                                                         ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTACTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgat                                                                                                                                                                       <  2:558373‑M1/198‑109 (MQ=255)                                                                                                                                                                                         ttctttcGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGATGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaacaacattgccgatg                                                                                                                                                                      <  2:25362‑M1/199‑110 (MQ=255)                                                                                                                                                                                                                    cAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCAttt                                                                                                                                                                                                                     >  1:678364/1‑125 (MQ=255)                                                                                                                                                                                                                       gTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTAtt                                                             >  1:45930/1‑274 (MQ=255)                                                                                                                                                                                                                        tCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGccc                                                                                                                                                                                                                 <  2:678355/125‑1 (MQ=255)                                                                                                                                                                                                                            gATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTTTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCACTCAAAAAGAAATCATCGAAAAAATAACTGCGCAGAATAGCGTTGGTCAACCTGCTTTATTTTTGGc                                                       >  1:3696/1‑275 (MQ=255)                                                                                                                                                                                                                                                     atGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAg                                                                                                                                                                          >  1:545518/1‑135 (MQ=255)                                                                                                                                                                                                                                                         tCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCa                                                                                                                                                                      <  2:545509/135‑1 (MQ=255)                                                                                                                                                                                                                                                          cGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTAGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCGCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACAGACATACTGACAACGGGaa                         >  1:379463/1‑275 (MQ=255)                                                                                                                                                                                                                                                                  tgCAATTGCTATTCTGCCCCTATTACTTGTGGGAATTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCATTCTAAAGAAATNATTGAAATNATAACTGCCCAGACTATCTTTAGTACAACTTCTTTATTTTTGGCTATGATGAACGCACATAc                                     >  1:468282/1‑255 (MQ=255)                                                                                                                                                                                                                                                                  tgCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAg                                                                                                                                                                          >  2:405701/1‑122 (MQ=255)                                                                                                                                                                                                                                                                      aTTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCa                                                                                                                                                                      <  1:405708/122‑1 (MQ=255)                                                                                                                                                                                                                                                                         gCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTat                                                    >  1:10371/1‑233 (MQ=255)                                                                                                                                                                                                                                                                             ttCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatgatg                                                <  2:10371/233‑1 (MQ=255)                                                                                                                                                                                                                                                                                 tccccTATTTCCTGGGGAAGTTCCAGGGGTTATTTTAGCGGGTATGTCAGCACCAATGCCATTTGACCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTAAATGATTCAAACAGTTGCACATAATCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGt  <  2:3696/274‑1 (MQ=255)                                                                                                                                                                                                                                                                                  cgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcctgtagccattattaac                                                                                                                                                                                   >  2:707636‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                  cgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataatgtaataagctgttgagactggcct                                                                                                                                                                                                  >  1:377865‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                  cgcagttattatttcaatgatttctttttcagggagtatgggcaactgtttgaataa                                                                                                                                                                                                                           >  2:239269‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                  cgcagttattatttcaatgatttctttttcagggagtatg                                                                                                                                                                                                                                            >  1:349848‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                  TGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTGTCCGTTTACGACCCGAACGATACCAACGTTGCCGTCAGAGACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTATTACCTGTGGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGT  >  CP009273/1798075‑1798621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.