New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2677543 =	33 (0.860)	4 (0.110)	4/308	NT	14.7%	noncoding (68/98 nt)	RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	2677718 =	14 (0.370)					coding (1149/1254 nt)	glyA	serine hydroxymethyltransferase

TTACGCATAAGCGAAACGGTGATTTGCTGTCAATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2677622‑2677543 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCA  >  CP009273/2677718‑2677850                                                                                                                                                                                                                       TTACGCATAAGCGAAACGGTGATTTGCTGTCAATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCAGCCAGTTCTTTCGCTTCGGCTTCTT                                                                                                             >  1:722700/1‑106     GCATAAGCGAAACGGTGATTTGCTGTCAATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAA                                                                                                         <  2:722690/106‑1                             GTCAATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTT      >  1:155256/1‑181                                 ATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCA  <  2:155253/181‑1                                                                               CCAGCCAGTTCTTTCGCATCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGA                >  1:155786/1‑121                                                                                                                                                                                                                       TTACGCATAAGCGAAACGGTGATTTGCTGTCAATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2677622‑2677543 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCA  >  CP009273/2677718‑2677850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.