New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2677543 =	33 (0.860)	4 (0.110)	4/308	NT	14.7%	noncoding (68/98 nt)	RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	2677718 =	14 (0.370)					coding (1149/1254 nt)	glyA	serine hydroxymethyltransferase

AAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGAACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCG  >  CP009273/2677464‑2677931                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                      aaaCGAAAAATTACCTGAGACTCCACGCTTATCATGACTACACGGGGTTTGTAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCCTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGAACTTTACCTTTTATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGc                                                                                                                                                                                                   <  2:698029/275‑1 (MQ=39)   aCGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGAACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGct                                                                                                                                                                                                  <  1:264733/274‑1 (MQ=255)        aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGAACTTNACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTa                                                                                                                                                                                            >  1:536081/1‑275 (MQ=255)                                                                   gccaaGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAAAGTGCGCAGATGTCGAGAACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATTCTGTCAAGCACTTCACACATCCAGCCAGCACGTTCTTTCCCTTCGACTTCTTTAAAGCAGCGACGGGCAATCGCCGGAGTACCCACACGAATACCGGCGCTGCCAAACGGGcc                                                                                                                                 >  2:617317/4‑274 (MQ=255)                                                                   gCAAAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGCACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCCGCCAGTTCTTTCCCTTCGGCTTCTTTCAAGCCCCGACGGGAAATCGCCCGAGTACCTACAAGAACACCGGAGTTCACaaagcgggt                                                                                                                                 >  2:122108/1‑269 (MQ=255)                                                                                                 acgcaaactCCGGCATGAACAACGATGACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCTAGAACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTttgt                                                                                                    <  2:88816/266‑1 (MQ=255)                                                                                                                        gAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGAACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCNGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTTTTGACGGTGATGTTAGCACGGCCCa                                                                            >  1:554396/1‑275 (MQ=255)                                                                                                                                                                               ttacgcataagcgaaacggtgatttgctgtcaatgtgctcgttgttcatgccggatgcggcgtgaacgccttatccggccAGCCAGTTCTTTCGCTTCGGcttctt                                                                                                                                                                                              >  1:722700‑M2/81‑106 (MQ=255)                                                                                                                                                                                   gcataagcgaaacggtgatttgctgtcaatgtgctcgttgttcatgccggatgcggcgtgaacgccttatccggccAGCCAGTTCTTTCGCTTCGGCTTCTTTaaa                                                                                                                                                                                          <  2:722690‑M2/30‑1 (MQ=255)                                                                                                                                                                                                  cTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTANCTACACGAATAGCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTgccg  <  1:657635/275‑1 (MQ=255)                                                                                                                                                                                                     tGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAg                                                                                                                                                                   >  2:235754/1‑111 (MQ=255)                                                                                                                                                                                                         gcgcTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTAcc                                                                                                                                                               <  1:235759/111‑1 (MQ=255)                                                                                                                                                                                                           gtcaatgtgctcgttgttcatgccggatgcggcgtgaacgccttatccggccAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGtt                                                                                       >  1:155256‑M2/53‑181 (MQ=255)                                                                                                                                                                                                               atgtgctcgttgttcatgccggatgcggcgtgaacgccttatccggccAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCa                                                                                   <  2:155253‑M2/133‑1 (MQ=255)                                                                                                                                                                                                                       cTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAAt                                                                                                                                                                           >  2:416773/1‑85 (MQ=255)                                                                                                                                                                                                                           atcatTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGcc                                                                                                                                                                       <  1:416780/85‑1 (MQ=255)                                                                                                                                                                                                                                      tGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACg                                                                                                              >  2:532335/1‑131 (MQ=255)                                                                                                                                                                                                                                          cAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGt                                                                                                          <  1:532343/131‑1 (MQ=255)                                                                                                                                                                                                                                                       aTCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGaa                     >  1:413219/1‑203 (MQ=255)                                                                                                                                                                                                                                                           agccagccagTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAgg                 <  2:413212/203‑1 (MQ=255)                                                                                                                                                                                                                                                             ccAGCCAGTTCTTTCGCATCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGa                                                                                                 >  1:155786‑M2/3‑121 (MQ=255)                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                      AAACGAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGGAGATTGCAATATATTGAATTTGCAAAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGAGCACATTGACAGCAAATCACCGTTTCGCTTATGCGTAAACCGGGTAACGTGCGCAGATGTCGAGAACTTTACCTTTGATGCGCTCGATAACGGCTTCATCATTGATGCTGTCCAGCACGTCACACATCCAGCCAGCCAGTTCTTTCGCTTCGGCTTCTTTAAAGCCGCGACGGGTAATCGCCGGAGTACCTACACGAATACCGGAGGTCACAAACGGGCTCTTCGGATCGTTCGGTACGCTGTTTTTGTTGACGGTGATGTTAGCACGGCCCAGAGCGGCGTCTGCTTCTTTACCGGTCAGGTTTTTATCAACCAGATCAACCAGGAACAGGTGGTTATCAGTGCCG  >  CP009273/2677464‑2677931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.