New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3109143 =	51 (1.330)	9 (0.250)	8/292	NT	18.7%	coding (3329/4563 nt)	yghJ	DUF4092 family putative lipoprotein peptidase
	?	CP009273	3109444 =	31 (0.870)					coding (3028/4563 nt)	yghJ	DUF4092 family putative lipoprotein peptidase

CGGGCATGATGAACCCGAGCTACCCGCTCAACTATATGGAAAAACCGCTGACACGCCTGATGCTGGGCCGTTCCTGGTGGGATCTGAACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3109422‑3109143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgtcaccgtAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGAACACTTGGTGCCGCCTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACGCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACG  >  CP009273/3109444‑3109708                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tataagtgacagACCCGAGCTACCCGCTCAACGATATGGAAAAACCGCTGACACGCCTGATGCTGGGCCGTTCCTGGTGGGATCTGAACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTGAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGT                                                                                                                                                                                                                                                                                 <  1:189530/262‑1                                                                                        ACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGCTCCTGTGACCGTCACCGCAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGACCACTTGGTGCCGCCTGCATAGGCATCATTTGCGCAGCc                                                                                                                                                                                         >  2:157984/1‑274                                                                                                                 TCCGGGAGCAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACC                                                                                                                                                                                                                                                       >  2:205102/1‑188                                                                                                                     GGAGCAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACCAGCG                                                                                                                                                                                                                                                   <  1:205106/188‑1                                                                                                                          AGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACCAGCGAT                                                                                                                                                                                                                                                 <  1:342771/185‑1                                                                                                                                                     TGAAACCATCAGCCTGTACTCGAATCCGACCAAAGGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGAACACTTGGTGCCGCCTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACG                                                                                                                             <  1:157987/274‑1                                                                                                                                                       AAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCAACGTAGATCATGTTGTTATCGACAAGCGATTTTTTCACATCTGCAGAACACTTGGTGTCGCCTCCATCGGCATCATTTGCGTAGAAGTTCAGGAACTAGGAGACGGTGTTAAAGCCACACTCGTGCGTTTTGCCTTCTTCATAACtt                                                                                                                            >  2:618275/1‑271                                                                                                                                                                                                GGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGAACACTTGGTGGCGCGTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACG                                                                                                                             <  1:414585/231‑1                                                                                                                                                                                                                CTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGAACACTTGGTGCCGCCTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTG                                                                                                                                                                         >  1:542216/1‑171                                                                                                                                                                                                                    CCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGTAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGAACACTTGGTGCCGCCTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACG                                                                                                                                                                     <  2:542207/171‑1                                                                                                                                                                                                                                                                               cgGTCACCGNAGATCTTGGTGTTATCGACCAGCGATTTTCTCAGATCTGCAGAACACTTGGTGCCGCCTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACGCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACG  <  2:263267/273‑1                                                                                                                                                                                                                                                                               CCGTCACCGTATATCATGTTGTTATCAACCAGCGATTTTTTCAGTTCTGCAGAACACTTGGTGCCGCATGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAANCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGAGCGACGCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAG     <  1:618284/272‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGGGCATGATGAACCCGAGCTACCCGCTCAACTATATGGAAAAACCGCTGACACGCCTGATGCTGGGCCGTTCCTGGTGGGATCTGAACATCAAAGTTGATGTCGAGAAGTATCCGGGAGCAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATGCAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3109422‑3109143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgtcaccgtAGATCATGTTGTTATCGACCAGCGATTTTTTCAGATCTGCAGAACACTTGGTGCCGCCTGCATAGGCATCATTGGCGTAGCAGTTCAGGAACTCGGTGAACGTTTTAAAGCCCAGCTCGTCATTTTTGCCTTCTTCATAACGATAGCTCGTATCGTTCCACAGCCAGACCGACATGTTCTGGTACAGACGTTCCAGATCGACGCTGCTCAGACGCTCACCTTTGCGACCATTGGTCCGGAAGTAGAGCTCATGCTGATACAGACG  >  CP009273/3109444‑3109708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.