New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3609842	65 (1.690)	5 (0.130)	5/304	NT	7.6%	coding (301/834 nt)	nikC	nickel transporter subunit
	?	CP009273	= 3610234	58 (1.560)					coding (693/834 nt)	nikC	nickel transporter subunit

AGGTCGCGATATTTTCTCGCGGCTGATGGCAGCGACCCGCGTGTCGCTCGGTTCGGTAATGGCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3609718‑3609842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGGAAAGACATCCCCGCGACGTGCAGCATCATATGGCCGATATCCAGCGTTGCCAGCACCAGCAGCGAAGGGATCACCGCGCCTGCCAGATGATCGACAAACACCCGCACATGGCCCGCACCGGAAAGCCGTGACGCCAGCACAAACTCGCGTTGGCGTAGTGAAATCACCAGGCTGCGCACCATGCGTGCATACCACGCCCAGTGCGACAGGGCGA  <  CP009273/3610234‑3609963                                                                                                                                                                                                                                                                                                                                                                                                               AGGTCGCGATATTTTCTCGCGGCTGATGGCAGCGACCCGCGTGTCGCTCGGTTCGGTAATGGCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCC                                                                                                                                                                                                                            >  1:396357/1‑179  GGTCGCGATATTTTCTCGCGGCTGATGGCAGCGACCCGCGTGTCGCTCGGTTCGGTAATGGCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTG                                                                                                                                                                                                                                                                                     >  1:618099/1‑121     CGCGATATTTTCTCGCGGCTGATGGCAGCGACCCGCGTGTCGCTCGGTTCGGTAATGGCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGG                                                                                                                                                                                                                        <  2:396350/179‑1                                                          AATGGCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCA                                                                                                                                                                                                                           >  2:557518/1‑123                                                              GCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGGA                                                                                                                                                                                                                       <  1:557527/123‑1                                                                 TGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGGAAAGACATCCCCGCGACGTGCAGCATCATATGGCCGATATCCAGCGTTGCCAGCACCAGCAGCGAAGGGATCACCGCGCCTGCCAGATGATCGACAAACAACCGCACAAGGCCCGCACCGGAAAGCCGTGACGACAGCACAAAACCGCGTCGGCG                                                             >  1:68994/1‑274                                                                        TGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTG                                                                                                                                                                                                                                                                                     >  2:237559/1‑51                                                                                                                          GGCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGGAAAGACATCCCCGCGACGTGCAGCATCATATGGCCGATATCCAGCGTTGCCAGCACCAGCAGCGAAGGGATCACCGCGCCTGCCAGATGATCGACAAACACCCGCACATGGCCCGACCCGGAAAGCCGTGACGCCAGCACAAACTCGCGTTGGCGTAGTGAAATCACCAGGCTGCGCACCATGCGTGCATACCACGCCCAGTCCGACAAGGCG   >  1:401818/1‑275                                                                                                                           GCGCGCGTCGTTAATCATCACGCCCCATTCGGCGGCCGGCGCGGTCACACCGAGGCCAAGGAAAGACATCCCCGCGACGTGCAGCATCATATGGCCGATATCCAGCGTTGCCAGCACC                                                                                                                                                               >  2:393462/1‑118                                                                                                                            aGCGCGGCGTAAATCAGCACGCCCCACTCGCCGGTTGGCGCGGTCGATCCGAGGCCAAGGAAAGACACCCCCGCGACGTGCGGCAGCATATGGCCGATAGCCAGCGTTGCCAGCACCAGCAGCGGAGGGATCACCGCGACTGCCGGATGATCGACAAACACCCGCACATGGCCCGCACCGGAAAGCCGTGACGCCAGCACAAACTCGCGTGGGCGTAGTGAAATCACCAGGCTGCGCACCATGCGTGCATACCACGCCCAGTGCGACAGGGCGA  <  2:599551/273‑1                                                                                                                             GCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGGAAAGACATCCCCGCGACGTGCAGCATCATATGGCCGATATCCAGCGTTGCCAGCACCAGCAGCGAAGGGA                                                                                                                                                  >  2:374995/1‑129                                                                                                                                                                                                                                                                                                                                                                                                               AGGTCGCGATATTTTCTCGCGGCTGATGGCAGCGACCCGCGTGTCGCTCGGTTCGGTAATGGCCTGCCTGCTGCTGGTGCTGACATTAGGGCTGGTTATTGGCGGCAGCGCCGGGTTGATTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3609718‑3609842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgCGCGTCGTTAATCATCACGCCCCATTCGGCGGTCGGCGCGGTCACACCGAGGCCAAGGAAAGACATCCCCGCGACGTGCAGCATCATATGGCCGATATCCAGCGTTGCCAGCACCAGCAGCGAAGGGATCACCGCGCCTGCCAGATGATCGACAAACACCCGCACATGGCCCGCACCGGAAAGCCGTGACGCCAGCACAAACTCGCGTTGGCGTAGTGAAATCACCAGGCTGCGCACCATGCGTGCATACCACGCCCAGTGCGACAGGGCGA  <  CP009273/3610234‑3609963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.