New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4378533 =	52 (1.350)	9 (0.250)	7/292	NT	16.5%	coding (655/3324 nt)	mscM	mechanosensitive channel protein, miniconductance
	?	CP009273	4378844 =	43 (1.200)					coding (344/3324 nt)	mscM	mechanosensitive channel protein, miniconductance

TTCGCGTTGCAGTCTGACTCTGCACGTCTTAAGGCGCTCGTTGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4378668‑4378533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaactggCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGTCGGTAGACATTCCCGGCGACACGCTGCGCGGCTCGTCACGCATGTTGTTTAATTGTGCGCGCAGAGTAGCGGAGAGTTTCGGATAATTATCGATAACTTGCTGAT  >  CP009273/4378844‑4378982                                                                                                                                                                                                                                                                                     TTCGCGTTGCAGTCTGACTCTGCACGTCTTAAGGCGCTCGTTGATGAACTGGGGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGTCGGTAGACATTCCCGGCGACACGCTGCGCGGCTCGTCACGCATGTTGTTTAATTGTGCGCGCAGAGTAGCGGAGAGTTTCGGATAATTATCGATAACTTGCTGAT  <  2:88787/275‑1                                 GGCGCTCGTTGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCA                                                                                                                                                     >  2:206306/1‑96                                     CTCGTTGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAA                                                                                                                                                 <  1:206310/96‑1                                      TCGTTGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAGAATTTCCTGATTCA                                                                                                                 >  2:687136/1‑127                                          TGATGAACTGGAGCTGGCGCAGCTGTCTGTCAATAACCGCCAGTAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGC                                                                                                                                                       <  1:407067/85‑1                                          TGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAGAATTTCCTGATTCAGCGC                                                                                                             <  1:687145/127‑1                                          TGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGC                                                                                                                                                       <  1:249971/85‑1                                                  TGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGTCGGTAGACA                                                                                                  >  1:675192/1‑130                                                  TGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAG                                                                                                                               >  2:307754/1‑101                                                  TGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCT                                                                                                                                   >  2:540841/1‑97                                                      GCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGTCGGTAGACATTCC                                                                                              <  2:675183/130‑1                                                      GCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAGAATT                                                                                                                           <  1:307760/101‑1                                                      GCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGGCTGCTGACCTGGAG                                                                                                                               <  1:540849/97‑1                                                                                                                                 GCAACTGGCTGCTGACCTGGAGAATTTCCTGATTCAGC                                                                                                               >  2:25187/1‑38                                                                                                                                     CTGGCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGc                                                                                                           <  1:25187/38‑2                                                                                                                                       GGCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGTCGGTAGACATTCACGGCGACACGCTGCGCGGCTCGTCACG                                                                   >  1:43847/1‑76                                                                                                                                                                                                                                                                                     TTCGCGTTGCAGTCTGACTCTGCACGTCTTAAGGCGCTCGTTGATGAACTGGAGCTGGCGCAGCTGTCTGCCAATAACCGCCAGGAATTAGCGCGCTTACGCTCAGAGCTGGCGGAAAAAGAGAGCCAGCAACTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4378668‑4378533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaactggCTGCTGACCTGGAGAATTTCCTGATTCAGCGCGTCGGTAGACATTCCCGGCGACACGCTGCGCGGCTCGTCACGCATGTTGTTTAATTGTGCGCGCAGAGTAGCGGAGAGTTTCGGATAATTATCGATAACTTGCTGAT  >  CP009273/4378844‑4378982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.