New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	127834 =	61 (1.590)	4 (0.110)	4/298	NT	7.6%	intergenic (‑87/‑268)	yacH/acnB	uncharacterized protein/bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase
	?	CP009273	127989 =	40 (1.100)					intergenic (‑242/‑113)	yacH/acnB	uncharacterized protein/bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase

AGGTGCGGAAACCGTTGCAGGAAACGTAACCGCGGCAGCGTCAGACACAGCCAGTTGTGTCGATTGCGGTTCCACAGGCGCTTCCACTGTGCGGCTTTTTATATATAGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGC  >  CP009273/127562‑128105                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                aacacggtttgttaacagatctaacaggaattcttcgtcgcccgcgggcgggtttttcagcatgtctacaagttcggccatttggtttgcatccaggggtttgggcgcaatcccctcagcggcacgctcagctacgtgcttaaggtattcttctagcacgacggttctcctcgctctcattgtcatagtgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggAtt                                                                                                                                                                                                                                                                               >  1:287981‑M1/273‑275 (MQ=255)    tGCGGAAACCGTTGCAGGAAACGTAACCGCGGCAGCGTCAGACACAGCCAGTTGTGTCGATTGCGGTTCCACAGGCGCTTCCACTGTGCGGCTTTTTATATATAGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCCGGTGCTGGGAATCCGAGTATAAAAAGGAGGAAATTTAAAttttt                                                                                                                                                                                                                                                                            >  1:14121/1‑274 (MQ=255)              gTTGCAGGAAACGTAACCGCGGCAGCGTCAGACACAGCCAGTTGTGTCGATTGCGGTTCCACAGGCGCTTCCACTGTGCGGCTTTTTATATATAGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCCAATTAGCGCCAGCACCTGAAGTTTAAACGGNAAAGTCATTTTCATAATTCGGATCTCAAGGAAATAGCAATGGTCGGCGAACTGACACCCGCAGGTGCTGTGAATCCTAGTATAAAGAGGCGGTAGATTAAATTTACACTAAtaatg                                                                                                                                                                                                                                                                  >  1:669524/1‑271 (MQ=255)                                                           gtCGATTGCGGTTCCACAGGCGCTTCCACTGTGCGGCTTTTTATATATAGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGt                                                                                                                                                                                                                     >  1:98470/1‑275 (MQ=255)                                                                      ttcagacggCGCTTCCACTGTGCGGCTTTTTAGATATTGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGa                                                                                                                                                                                                            <  2:98469/266‑1 (MQ=255)                                                                            agcgccTTCCCCTGTGAGGCTTTTTATCTTTGCCCCGTTAGAGGCGGCACAAAGCCCGGAACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAAc                                                                                                                                                                                                     <  2:166805/269‑1 (MQ=255)                                                                                          tgCGGCTTTTTATATATAGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACACGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATTCGAATTAACGAAGTTTTTACGGAGGGAAACaaaccatagaacaa                                                                                                                                                                                       >  1:692307/1‑262 (MQ=255)                                                                                                    tttgggcgcaatcccctcagcggcacgctcagctacgtgcttacggtattcttctagcacgacggttctcctcgctctcattgtcatagtgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaactggcagaatagcaggATTTTGACTAATCTTGGGATTCGTTGAGAAATGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAAAAACTTATAGACCATCCttaacttta                                                                                                                                                                            <  2:495959‑M1/102‑5 (MQ=255)                                                                                                        tataCCACGGGAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGGCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGc                                                                                                                                                                        <  2:14121/275‑1 (MQ=255)                                                                                                           aGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCGAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTAGACTAATCTTGGNATTCGTTGNGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCAc                                                                                                                                                                     >  1:462625/1‑275 (MQ=255)                                                                                                             cccGGTAGAGGCGGCACAAAGCCAGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAAttt                                                                                                                                                                                                                                                                              >  2:145092/1‑168 (MQ=255)                                                                                                                 gTAGAGGCGGCACAAAGCCAGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGAc                                                                                                                                                                                                                                                                          <  1:145093/168‑1 (MQ=255)                                                                                                                           cacgctcagctacgtgcttacggtattcttctagcacgacggttctcctcgctctcattgtcatagtgcggcaggcgattctcttcacgctnctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCCGCCACTTTTTTATGTTGCttt                                                                                                                                                     >  1:495966‑M1/151‑275 (MQ=255)                                                                                                                              aaaGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTCACGATTCAGCCACTTTTTTATGTTGCt                                                                                                                                                       <  1:422034/270‑1 (MQ=255)                                                                                                                                            ttacggtattcttctagcacgacggttctcctcgctctcattgtcatagtgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggAtt                                                                                                                                                                                                                                                                               <  2:433801‑M1/3‑1 (MQ=255)                                                                                                                                                ggtattcttctagcacgacggttctcctctctctcattgtcatagtgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggATTTTGa                                                                                                                                                                                                                                                                           >  1:433808‑M1/130‑136 (MQ=255)                                                                                                                                                         gCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCaaaa                                                                                                                        >  2:670363/1‑274 (MQ=255)                                                                                                                                                                      aaaCGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGt                                                                                                                                                                                                                                                          >  1:270511/1‑131 (MQ=255)                                                                                                                                                                          ggCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTgag                                                                                                                                                                                                                                                      <  2:270506/131‑1 (MQ=255)                                                                                                                                                                           gCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATctct                                                                                                                                                                                              >  1:324580/1‑186 (MQ=255)                                                                                                                                                                           gCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATAATCACCATGCGAATTAACGAAGTTTTTACGGAGGGa                                                                                                                                                                                                        >  1:595907/1‑176 (MQ=255)                                                                                                                                                                               aGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACa                                                                                                                                                                                                    <  2:595898/176‑1 (MQ=255)                                                                                                                                                                               aGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGAc                                                                                                                                                                                          <  2:324574/186‑1 (MQ=255)                                                                                                                                                                                         atagtgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggAtttt                                                                                                                                                                                                                                                                             <  2:374502‑M1/5‑1 (MQ=255)                                                                                                                                                                                           agtgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTa                                                                                                                                               <  2:52880‑M1/131‑1 (MQ=255)                                                                                                                                                                                           aaTTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAg                                                                                                                                                                                                                                                  >  2:444347/1‑118 (MQ=255)                                                                                                                                                                                            aTTCGGTGCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGGGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTNAAATTTTGNCTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATACTGCCCGTTGCGGTACTGGGCATTTa                                                                                    <  1:477124/275‑1 (MQ=255)                                                                                                                                                                                             ttCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCCCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGATTTTTTg                                                                                                                                                 >  2:487791/1‑213 (MQ=255)                                                                                                                                                                                             tgcggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggAtttt                                                                                                                                                                                                                                                                             <  1:475744‑M1/5‑1 (MQ=255)                                                                                                                                                                                               cggcaggcgattctcttcacgctcctgtgagacagcagtttgtagggtaaatgcccagtaccgcaacgggcagaatagcaggATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACa                                                                                                                                           >  1:52880‑M1/83‑217 (MQ=255)                                                                                                                                                                                               cGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGa                                                                                                                                                                                                                                              <  1:444354/118‑1 (MQ=255)                                                                                                                                                                                                 gATCTCAAGGAAATCGCAATGGTCGGCGANCTGCCACCCCCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCGTCCACCTTTTTATTTTGCTTTTTTGTaaa                                                                                                                                             <  1:487798/213‑1 (MQ=255)                                                                                                                                                                                                  aTCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGaa                                                                                                                                                                                                                                                    >  2:610019/1‑109 (MQ=255)                                                                                                                                                                                                  aTCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAAtctc                                                                                                                                                                                               >  2:51321/1‑162 (MQ=255)                                                                                                                                                                                                  aTCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTg                                                                                                    <  2:299610/253‑1 (MQ=255)                                                                                                                                                                                                  aTCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTg                                                                                                    >  1:299616/1‑253 (MQ=255)                                                                                                                                                                                                      cAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGt                                                                                                                                                                                                                                                <  1:610028/109‑1 (MQ=255)                                                                                                                                                                                                      cAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGa                                                                                                                                                                                           <  1:51321/162‑1 (MQ=255)                                                                                                                                                                                                              tCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGtttt                                                                                                                                                                                                                  >  1:387524/1‑131 (MQ=255)                                                                                                                                                                                                                 cAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAAtctc                                                                                                                                                                                               >  1:150139/1‑147 (MQ=255)                                                                                                                                                                                                                  aaTGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACg                                                                                                                                                                                                              <  2:387518/131‑1 (MQ=255)                                                                                                                                                                                                                     ggTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGa                                                                                                                                                                                           <  2:150138/147‑1 (MQ=255)                                                                                                                                                                                                                         ggCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTc                                                                                                                            >  2:86613/1‑206 (MQ=255)                                                                                                                                                                                                                             aaCTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCaaaa                                                                                                                        <  1:86614/206‑1 (MQ=255)                                                                                                                                                                                                                              aCTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAggg                                                                                                                                                                                                         >  1:478846/1‑124 (MQ=255)                                                                                                                                                                                                                                  ccACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAAc                                                                                                                                                                                                     <  2:478839/124‑1 (MQ=255)                                                                                                                                                                                                                                               aaatgcccagtaccgcaacgggcagaatagcaggATTTTGa                                                                                                                                                                                                                                                                           <  2:613404‑M1/7‑1 (MQ=255)                                                                                                                                                                                                                                                       ccGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACttttt                                                                                                                                                                >  2:282302/1‑140 (MQ=255)                                                                                                                                                                                                                                                          aGTCTAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAggg                                                                                                                                                                                                         >  2:40781/1‑96 (MQ=255)                                                                                                                                                                                                                                                           gTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATg                                                                                                                                                            <  1:282307/140‑1 (MQ=255)                                                                                                                                                                                                                                                            tatgAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGCGGGAAACAATCGCTAGACCATCCTTAACTATTCAGCCACTTTTTTATGTTGCTTTTTGGTAAACAGATTAACACCTCGCCAAAATCCTGCTATTCTGACCGTCGCGGACCTGGCCATTTACCCTACAAACTGCCATCCCACAGGAGCGGGAAGTGAACCGCCGGCCGCACtcgtacactgcg                      >  2:667710/1‑262 (MQ=255)                                                                                                                                                                                                                                                              taAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAAc                                                                                                                                                                                                     <  1:40781/96‑1 (MQ=255)                                                                                                                                                                                                                                                              taAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTg                                                                                                                                                 >  1:360492/1‑148 (MQ=255)                                                                                                                                                                                                                                                                 agagGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTTAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGTCACTTATTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCgag                <  1:632691/274‑1 (MQ=255)                                                                                                                                                                                                                                                                  gagGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTaaa                                                                                                                                             <  2:360486/148‑1 (MQ=255)                                                                                                                                                                                                                                                                    ggCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGa                                                                                                                                                                                                                                              >  2:562920/1‑49 (MQ=255)                                                                                                                                                                                                                                                                    ggCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAAt                                                                                                                       >  2:513690/1‑168 (MQ=255)                                                                                                                                                                                                                                                                     gCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACa                                                                                                                                                                                                    >  2:172501/1‑90 (MQ=255)                                                                                                                                                                                                                                                                      cGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAggg                                                                                                                                                                                                         >  2:260032/1‑84 (MQ=255)                                                                                                                                                                                                                                                                      cGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGt                                                                                                                                                           >  2:337570/1‑130 (MQ=255)                                                                                                                                                                                                                                                                      cGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTg                                                                                                                                                 >  1:668124/1‑140 (MQ=255)                                                                                                                                                                                                                                                                      cGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGAAAACAATCACTAGACCATCCTTAACGATTCAGCTACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACATCGTCAAACTCCTGCTATTCTTCCCGTTGCTGTACTGGGCATTTACCATACAACCTGCTGTCTCACCGGCGCGTGAAGAGAAGCGCCTGCCGCACCATGCCAATGAGAGCGAGgagac           >  2:300073/1‑273 (MQ=255)                                                                                                                                                                                                                                                                      cGGTAGTTTAAATTTTGACTAATCGTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTg                                                                                                                                                 >  1:500615/1‑140 (MQ=255)                                                                                                                                                                                                                                                                        gTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTAt                                                                                                                                                                                                                                          <  1:562929/49‑1 (MQ=255)                                                                                                                                                                                                                                                                        gTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAAtctc                                                                                                                                                                                               >  1:267449/1‑92 (MQ=255)                                                                                                                                                                                                                                                                        gTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTGAACAGATTAACACCTCGTCAAAATCCTg                                                                                                                   <  1:513697/168‑1 (MQ=255)                                                                                                                                                                                                                                                                        gTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTc                                                                                                                            >  1:31835/1‑159 (MQ=255)                                                                                                                                                                                                                                                                        gTAGTTTAAATTTTGACTAATCTTGGGACTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGtttt                                                                                                                                                                                                                  >  1:517149/1‑73 (MQ=255)                                                                                                                                                                                                                                                                         tAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAAtct                                                                                                                                                                                                <  1:172504/90‑1 (MQ=255)                                                                                                                                                                                                                                                                          aGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAAc                                                                                                                                                                                                     <  1:260037/84‑1 (MQ=255)                                                                                                                                                                                                                                                                          aGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCt                                                                                                                                                       <  1:337576/130‑1 (MQ=255)                                                                                                                                                                                                                                                                          aGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTaaa                                                                                                                                             <  2:500608/140‑1 (MQ=255)                                                                                                                                                                                                                                                                          aGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTaaa                                                                                                                                             <  2:668115/140‑1 (MQ=255)                                                                                                                                                                                                                                                                            tttAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACg                                                                                                                                                                                                              <  2:517142/73‑1 (MQ=255)                                                                                                                                                                                                                                                                            tttAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGa                                                                                                                                                                                           <  2:267444/92‑1 (MQ=255)                                                                                                                                                                                                                                                                            tttAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCaaaa                                                                                                                        <  2:31835/159‑1 (MQ=255)                                                                                                                                                                                                                                                                              tAAATTTTTACTAATCTTTGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGc  <  1:349275/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                AGGTGCGGAAACCGTTGCAGGAAACGTAACCGCGGCAGCGTCAGACACAGCCAGTTGTGTCGATTGCGGTTCCACAGGCGCTTCCACTGTGCGGCTTTTTATATATAGCCCGGTAGAGGCGGCACAAAGCCCGGCACTGCAAATTAGCGCCAGCACATGGGGTTTAAACGGCAAAGTCATTTTCATAATTCGGATCTCAAGGAAATCGCAATGGTCGGCGAACTGCCACCCGCAGGTGCTGTGAATCCGAGTATAAAGAGGCGGTAGTTTAAATTTTGACTAATCTTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAAACAATCTCTAGACCATCCTTAACGATTCAGCCACTTTTTTATGTTGCTTTTTTGTAAACAGATTAACACCTCGTCAAAATCCTGCTATTCTGCCCGTTGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCGTGC  >  CP009273/127562‑128105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.