New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 159805	43 (1.120)	4 (0.110)	4/298	NT	7.5%	coding (1214/2430 nt)	hrpB	putative ATP‑dependent helicase
	?	CP009273	= 160166	58 (1.590)					coding (1575/2430 nt)	hrpB	putative ATP‑dependent helicase

GCGTGCCGGGCGCGCCGGGCGTCTGGAGCCGGGTATCAGCCTGCATTTAATCGCCAAAGAACAAGCAGAACGCGCCGCGGCGCAAAGTGAACCGGAGATCTTACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGCAGCAACGTAGTCAGCAACTGTTAAAACGCTTAAACGTACGTGGCGGTGAGGCAGACAGTTCGCTTATCGCGCCGCTACTTGCCGGGGCGT  >  CP009273/159548‑160077                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                 gCGTGCCGGGCGCGCCGGGCGTCTGGAGCCGGGTATCAGCCTGCATTTAATCGCCAAAGAACAAGCAGAACGCGCCGCGGCGCAAAGTGAACCGGAGATCTTACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCaaaaaa                                                                                                                                                                                                                                                                 >  1:333456/1‑275 (MQ=255)             ggacGGGGGTGTTGAGGCGGGTGCAAGCCGGGATTTAATCGCCAAAGAAAGAGTAGAACGCGCCGCGGCGCAAAGTGAACCGGAGATCTGACAGAGCGATCTTTCCGGGTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCt                                                                                                                                                                                                                                                       <  2:638112/270‑1 (MQ=255)                                                   tCGCCAAAGAACAAGCAGAACGCGCCGCGGCGCAAAGTGAACCGGAGATCTTACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGcgcg                                                                                                                                                                                                               >  1:258845/1‑275 (MQ=255)                                                       caacgaaaaacgaGACCGCGCCCCGGCGCAAGGTGCACCGAAGATATTACAAAGCGATCTTTCCGGTTTGTTGATGGTAGTACTGCAATGGGGATGCATCGATCCGGCGCAGATGATCTGGCTGGAACAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACCAACGCCGGGGGCACTGATGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTCACGATCCGCGTTTAGCGGCAATGCTGGTTAGcgcg                                                                                                                                                                                                               <  2:212662/259‑1 (MQ=255)                                                                                              caagaTCTTACAAAGCGTTCTTTGCGGTGTGCTGATGGAATTACTGCAATGGGGATTCAGCGTTCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTgccgc                                                                                                                                                                      <  2:320895/271‑1 (MQ=255)                                                                                                          aaGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTg                                                                                                                                                                          >  1:320901/1‑257 (MQ=255)                                                                                                               aTCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCcgc                                                                                                                                                                                                                                         >  2:712401/1‑189 (MQ=255)                                                                                                                   ttCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGc                                                                                                                                                                                                                                                             >  1:283979/1‑165 (MQ=255)                                                                                                                   ttCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGttt                                                                                                                                                                                                                                     <  1:712411/189‑1 (MQ=255)                                                                                                                    tCCAGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCATTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGa                                                                                                                                               >  2:246126/1‑274 (MQ=255)                                                                                                                       ggTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgcg                                                                                                                                                                                                                                                         <  2:283974/165‑1 (MQ=255)                                                                                                                            gCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGATACCGCGGCAAAAATTGCCGCCATTCACGAAGAGCCGCCACGGATGGGCAATa                                                                                                                                      >  1:303115/1‑275 (MQ=255)                                                                                                                                  ggAATTAATGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGAcc                                                                                                                                <  1:164504/275‑1 (MQ=255)                                                                                                                                          tGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGc                                                                                                                                                                                                                                                             >  1:180035/1‑142 (MQ=255)                                                                                                                                            cAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACGGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCGGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGGGCCGCCAGGGCGGGGCAATAGTGAGCTggggagggc                                                                                                                      >  2:164501/1‑269 (MQ=255)                                                                                                                                              aTGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgcg                                                                                                                                                                                                                                                         <  2:180032/142‑1 (MQ=255)                                                                                                                                                   gATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGc                                                                                                                                                                                                                                                             >  1:159857/1‑133 (MQ=255)                                                                                                                                                       cAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAgcg                                                                                                                                                                                                                                                         <  2:159854/133‑1 (MQ=255)                                                                                                                                                       cAGCGATCCGGCGCAGATGAGCGGTCTCGATCACCTGCCAGGAGTTAATCGTCTGGCCGCGAAATGTCTGTTACAACTGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAAGGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCGGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCa                                                                                                           <  2:303109/275‑1 (MQ=255)                                                                                                                                                           gATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGAGGGGCAAAAGTGACCTGGTCGTGGCTTTTTCGCGCTATc                                                                                                        >  2:611626/1‑274 (MQ=255)                                                                                                                                                               cGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGGCGAAGATGCTCCCGCGGCAAAAATTGCAGCCATTCCCGAAGAgccggc                                                                                                                                                    >  2:5884/1‑224 (MQ=255)                                                                                                                                                                               gctggATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGAAATCAACCAGCCTGGCAGCAACGTa                                                                                   >  1:261929/1‑275 (MQ=255)                                                                                                                                                                                        aaagCCGGTNGTGAATCTAGGGGACGGGAATCGTGGGTTACGAATGCTGGGGGTCCTGTAGTGTGAGCGGTTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCTGCGTTTAGCGGCAATGCTGGTGAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGCAGCAACGTAGTCAGCAAc                                                                          <  2:261924/272‑1 (MQ=255)                                                                                                                                                                                         ccGCCAGTAGTGAATCTACGGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTg                                                                                                                                                                                                                                                      >  1:574339/1‑102 (MQ=255)                                                                                                                                                                                             cAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGcgcgtcgttggcatcgagcatcgctcccatgccgtttgtcagttgatagcgtccatcttgcccacggcgacg                                                                                                                                                                                                          >  1:638065‑M1/1‑70 (MQ=255)                                                                                                                                                                                             cAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTa                                                                                                                                                                                                                                                  <  2:574330/102‑1 (MQ=255)                                                                                                                                                                                                 agtGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGcgcgtcgttggcatcgagcatcgctcccatgccgtttgtcagttgatagcgtccatcttgcccacggcgacgagca                                                                                                                                                                                                      <  2:638056‑M1/142‑77 (MQ=255)                                                                                                                                                                                                    gAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGgcagca                                                                                        <  1:438701/249‑1 (MQ=255)                                                                                                                                                                                                           cTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTAGTGGCTGACCGGCTCAGTGCGCGAGGGCAAATAGTGGCACCGCTGGGTAAGGATACGCGTTTAGCACCCATGCTTGTTAGCGCGAAGCACGACGACGAGGCTGCTACCGCGGCCATTATTGCCGCCATTCTCTAAGGACCGCCCCGGATGGGCAATACTGACCTGGGCGTGCCGCTCTCGCCCAAGACACCAGCCCGGCAGGAACCTGAGCAGCAAGTGTTCACACGCTTaaaggc                                                       >  2:184869/1‑272 (MQ=255)                                                                                                                                                                                                            tGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTgcc                                                                                                                                                                        >  2:348804/1‑161 (MQ=255)                                                                                                                                                                                                              gCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGa                                                                                                                                               >  1:658930/1‑184 (MQ=255)                                                                                                                                                                                                                cgcgAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCa                                                                                                                                                                    <  1:348810/161‑1 (MQ=255)                                                                                                                                                                                                                  cgAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATggg                                                                                                                                           <  2:658921/184‑1 (MQ=255)                                                                                                                                                                                                                    aaaCGTCTGTGAGAAATGTTGGGGGCTCTGGAGGGTGAACGGCTTAGTGGTCAAGGGCAAAAAATGGGAGCGCGGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGCAGCAACGTAGTCAGCAACTGTTAAAACGCTTAAACGTACGTGGCg                                               <  1:184872/274‑1 (MQ=255)                                                                                                                                                                                                                        gTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGcgcgtcgttggcatcgagcatcgctcccatgccgtttgccagttgatagcgtccatcttgcccacggcgacgagcaatgcgatcggcaaac                                                                                                                                                                                       >  2:721284‑M1/1‑43 (MQ=255)                                                                                                                                                                                                                            gTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGcgcgtcgttggcatcgagcatcgctcccatgccgtttgccagttgatagcgtccatcttgcccacggcgacgagcaatgcgatctgcaaacgccc                                                                                                                                                                                   <  1:721294‑M1/134‑96 (MQ=255)                                                                                                                                                                                                                                               cTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAGAATGGc                                                                                                                                                                                                                                                             >  2:554678/1‑41 (MQ=255)                                                                                                                                                                                                                                               cTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGgc                                                                                            >  2:302852/1‑202 (MQ=255)                                                                                                                                                                                                                                                tGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTggg                                                                                                                            >  2:139733/1‑169 (MQ=255)                                                                                                                                                                                                                                                   aGGGTGAACGGCTTAGTGCGCAAGGGCAAAGAATGGCAgcg                                                                                                                                                                                                                                                         <  1:554687/41‑1 (MQ=255)                                                                                                                                                                                                                                                   aGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGgcagca                                                                                        <  1:302858/202‑1 (MQ=255)                                                                                                                                                                                                                                                    gggTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGggcgtg                                                                                                                        <  1:139734/169‑1 (MQ=255)                                                                                                                                                                                                                                                       tGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGCAGCAACGTAGTCAGCAACTGTTAAAACGCTTAAACGTACGTGGCGGTGAGGCAGACAGTTCGCTTATCGCGCCGCTACTTg           >  1:580269/1‑275 (MQ=255)                                                                                                                                                                                                                                                        gAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGt                                                                                                                                    >  2:31180/1‑153 (MQ=255)                                                                                                                                                                                                                                                          aCGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAgccgcc                                                                                                                                                    >  2:372446/1‑135 (MQ=255)                                                                                                                                                                                                                                                          aCGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGCAGCAACGTAGTCAGCAACTGTTAAACCGCTTACACGTACGTGGCGGTGAGGCAGACAGGTCGCTTATAGAGCAGCTACTTGcc         >  1:254240/1‑274 (MQ=255)                                                                                                                                                                                                                                                            ggCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGAcc                                                                                                                                <  1:31180/153‑1 (MQ=255)                                                                                                                                                                                                                                                              cTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACgg                                                                                                                                                <  1:372452/135‑1 (MQ=255)                                                                                                                                                                                                                                                                 aGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGNAGCAACGTAGTCAGCAACTGTTAAAACGCTTAAACGTACGTGGCGGTGAGGCAGACAGTTCGCTTATCGCGCCGCTACTTGCAGGGGCGt  >  1:512247/1‑274 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                 GCGTGCCGGGCGCGCCGGGCGTCTGGAGCCGGGTATCAGCCTGCATTTAATCGCCAAAGAACAAGCAGAACGCGCCGCGGCGCAAAGTGAACCGGAGATCTTACAAAGCGATCTTTCCGGTTTGCTGATGGAATTACTGCAATGGGGATGCAGCGATCCGGCGCAGATGAGCTGGCTGGATCAACCGCCAGTAGTGAATCTACTGGCCGCGAAACGTCTGTTACAAATGCTGGGGGCACTGGAGGGTGAACGGCTTAGTGCGCAAGGGCAAAAAATGGCAGCGCTGGGTAACGATCCGCGTTTAGCGGCAATGCTGGTTAGCGCGAAGAACGACGACGAAGCTGCTACCGCGGCAAAAATTGCCGCCATTCTCGAAGAGCCGCCACGGATGGGCAATAGTGACCTGGGCGTGGCGTTTTCGCGCAATCAACCAGCCTGGCAGCAACGTAGTCAGCAACTGTTAAAACGCTTAAACGTACGTGGCGGTGAGGCAGACAGTTCGCTTATCGCGCCGCTACTTGCCGGGGCGT  >  CP009273/159548‑160077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.