New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 239496	33 (0.860)	20 (0.540)	10/300	NT	31.1%	coding (295/2445 nt)	fadE	acyl coenzyme A dehydrogenase
	?	CP009273	= 239679	57 (1.550)					coding (112/2445 nt)	fadE	acyl coenzyme A dehydrogenase

TTTTTGCAGCACGCGAGACTGGGCATAAGCCGAGAACTCCAGCCCGCCGTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGGCGCAAAGTTAAATGGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTGATAGAACAACGCGCCGAGCAGGACAACCGT  >  CP009273/239224‑239766                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                               tttcggaggatcgcgagtcggggcnaAGGCCGAGAACGCCAGCCCGCCTGACTCTTTTGTGATGATACTCGCTCAGAAACGATTCTTTTGAAGGTACGCCCTCAACTCCGGCGGCAGAACCGCCAGATCATGGGGGATCTGGAAATCATTCGCCAGCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGTTAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTC                                                                                                                                                                                                                                                                                <  2:483769‑M1/262‑1 (MQ=255)                   cTGGGCATACGCCGAGAACTCCAGCCCGCCGTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCAt                                                                                                                                                                                                                                                            <  1:215889/275‑1 (MQ=255)                    tGGGCATAAGCCGAGAACTCCAGCCCGCCGTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGNCGGTCAGGNGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCAt                                                                                                                                                                                                                                                            >  1:468512/1‑274 (MQ=255)                             gCCGAGAACTCCAGCCCGCCGTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACTGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggt                                                                                                                                                                                                                                                   >  1:643932‑M1/1‑245 (MQ=255)                                        cAGCCCGCCGTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTC                                                                                                                                                                                                                                                                                >  2:635472‑M1/1‑234 (MQ=255)                                            ccgccgTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCccac                                                                                                                                                                                                                                                                            <  1:635481/234‑1 (MQ=255)                                                       ttttttGATGCTCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCa                                                                                                                                                                                                                        <  1:34968/275‑1 (MQ=255)                                                       ttttttGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGNCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCATCCCACCAGACGGTGCCCGCATCCATCGCATCTTTCTCAGAGCGCGACCTcggcggat                                                                                                                                                                                                                        >  1:620510/1‑273 (MQ=255)                                                                                                  gCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCT‑GAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGTCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGAc                                                                                                                                                                            >  1:447551/1‑275 (MQ=255)                                                                                                             cggcggCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACa                                                                                                                                                                                                                                 >  1:428005/1‑212 (MQ=255)                                                                                                              ggcggcAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgctttccgcgccggtctttcgc                                                                                                                                                                 >  1:454464‑M1/1‑164 (MQ=255)                                                                                                              ggcggcAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgctgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcggcggtctctcgc                                                                                                                                                                 >  2:153322‑M1/1‑164 (MQ=255)                                                                                                                cggcAGATCCGCCAGTTCTTGGGTGATTTTGACATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGNCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcgg                                                                                                                                                               <  1:520163‑M1/275‑114 (MQ=255)                                                                                                                cggcAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGNCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcgg                                                                                                                                                               <  1:504503‑M1/275‑114 (MQ=255)                                                                                                                 ggcATATCCGCCAGTTCATTGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATcgg                                                                                                                                                                                                                             <  2:427998/212‑1 (MQ=255)                                                                                                                 ggcAGTGCCGCCAGCTTATGGGTGTTCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGACGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggt                                                                                                                                                              <  1:400304‑M1/275‑115 (MQ=255)                                                                                                                 ggcAGATCCGCCAGGTTATGGTTGATCTGTAAACCATTCGCCATCCCGCAGGCTTCTTCTACCGGGCCGTCGAAAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggt                                                                                                                                                              <  1:221181‑M1/275‑115 (MQ=255)                                                                                                                 ggcAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggt                                                                                                                                                              <  1:153325‑M1/275‑115 (MQ=255)                                                                                                                                         aTCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactgggtcctcttgcccttatcctcgtgccattttactttgcgcctgttcgtcagtcgtgtatttcctcgccggtattgcggtttttccgtttggtgtttccgcttgtg                                                                                                                                      >  2:246548‑M1/1‑137 (MQ=255)                                                                                                                                         aTCTGGAAATCATTCGACATCCGGCAGGTTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccantatccccgtgccatttaactttgcgcctatgcgtaagtcgatgctttccgcgccggtatttcg                                                                                                                                                                  >  1:534679‑M1/1‑137 (MQ=255)                                                                                                                                            tGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCCCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCTGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATACGCCCAAACTTAAATGGCACGAGGATAATgg                                                                                                                                    >  1:159965/1‑274 (MQ=255)                                                                                                                                              gAAATCATTCGCCATCCGGCAGGCATCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTACCAGTCCGACTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGCTGCCCGCATCAATCGCTTCTTTCACAGTGCGCGACATCGGCGGCATCACCTTAAGGAAAACGCTCAATACCAGCGCGGAAATCATGGACTTACGCACAGGCGCAAAGTAAAATGGCCCGGGGAAAATAGcc                                                                                                                                  >  2:157478/1‑274 (MQ=255)                                                                                                                                                aaTCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggt                                                                                                                                                              <  1:568002‑M1/244‑115 (MQ=255)                                                                                                                                                                      ttcttcTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGCGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAatcatc                                                                                                                                                                               >  1:653809/1‑205 (MQ=255)                                                                                                                                                                          tctACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACt                                                                                                                                                                           <  2:653800/205‑1 (MQ=255)                                                                                                                                                                            tACCGGGCCGTCGAGAAACGGTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggtttccgtaaggtgatgccgccgatgtcgcgcactgagaaagaagcgattgatgcgggcac                                                                                                   <  1:246553‑M1/275‑174 (MQ=255)                                                                                                                                                                              ccGGGCCGGCGAGAAACGCTTGCGCTTGGGCGGTGAGGCGCGGCTGCGGGTAGTTATGGATCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgtggctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggtttccgtaaggtgatgccgccgatgtcgcgcactgagaaagaagcgattgatgcgggcac                                                                                                   <  2:649455‑M1/273‑174 (MQ=255)                                                                                                                                                                               cGGGCGCTCGGGAACCTCTTTCGCTTCGGCGGTCCGGCGCGGCTGCGGTTGTTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggtttccgtaaggtgatgccgccgatgtcgcgcactgagaaagaagcgattgatgcgggcacca                                                                                                 <  2:643923‑M1/274‑176 (MQ=255)                                                                                                                                                                                  gCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCTCGGAAATCATCGACTTa                                                                                                                                                                         >  1:123012/1‑199 (MQ=255)                                                                                                                                                                                   ccGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGGCGCAAAGTTAAATGGCACGAGGATAATGGCCAGAGGCACCAGTACCAAAGCCGACCACAGACCAGCAAc                                                                                            >  1:371015/1‑275 (MQ=255)                                                                                                                                                                                      tCGAGAAACGGTTGCTCTGCGGCGGGCAGGCGCGGCTGCGGATAGTTATGCAGCTTGTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGGGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCa                                                                                                                                                                     <  2:123011/199‑1 (MQ=255)                                                                                                                                                                                                                             ggATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgcgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttc                                                                                                                                                                   >  2:305674‑M1/1‑53 (MQ=255)                                                                                                                                                                                                                             ggATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATc                                                                                                                                                                                                                                                           >  2:125956/1‑74 (MQ=255)                                                                                                                                                                                                                                 aGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgcgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcgg                                                                                                                                                               <  1:305680‑M1/162‑114 (MQ=255)                                                                                                                                                                                                                                 aGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATc                                                                                                                                                                                                                                                       <  1:125957/74‑1 (MQ=255)                                                                                                                                                                                                                                        cAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGgtggtg                                                                                                                                                                                                                                                                   >  1:383869/1‑55 (MQ=255)                                                                                                                                                                                                                                           cTTTTTCCAGTCCGGGTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGGCGCAAAGTTAAATGGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCAcgc                                    <  1:204159/275‑1 (MQ=255)                                                                                                                                                                                                                                           cTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGTAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCAAAGGCGCAAAGTNAACTGGCACGAGGGTAATGGCCAGAGGAACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAACAAAATCAGACTGCTGCTAAATAAGCTCAcgc                                    >  1:645783/1‑275 (MQ=255)                                                                                                                                                                                                                                            tttttCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCg                                                                                                                                                                                                                                                               <  2:383863/55‑1 (MQ=255)                                                                                                                                                                                                                                             ttttCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGGCGCACAGTTAAATGGCACGAGGATAATGGCCAGAGGCCCCAGTACCCACCACGACCAAAGCCCAGCAACGACGAGGGCGGCTGTCCAGGCGAGCAAAACCAGACGGCTGACAAACAAGACCAcgcg                                   >  2:284740/1‑274 (MQ=255)                                                                                                                                                                                                                                                     tCCGGCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttc                                                                                                                                                                   >  1:548914‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                                     tCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAggt                                                                                                                                                                                                                                                                       >  2:670851/1‑38 (MQ=255)                                                                                                                                                                                                                                                     tCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATc                                                                                                                                                                                                                                                           >  1:233401/1‑50 (MQ=255)                                                                                                                                                                                                                                                     tCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATa                                                                                                                                                                   >  2:88976/1‑138 (MQ=255)                                                                                                                                                                                                                                                         gCTTGCCCTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcgg                                                                                                                                                               <  2:548905‑M1/138‑114 (MQ=255)                                                                                                                                                                                                                                                         gCTTGCCCTGGAACAAGTCGCCCTCCCACCAGgtggtg                                                                                                                                                                                                                                                                   <  1:670860/38‑1 (MQ=255)                                                                                                                                                                                                                                                         gCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATc                                                                                                                                                                                                                                                       <  2:233396/50‑1 (MQ=255)                                                                                                                                                                                                                                                         gCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGgcg                                                                                                                                                               <  1:88977/138‑1 (MQ=255)                                                                                                                                                                                                                                                              cccTGGAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcg                                                                                                                                                                  >  1:368664‑M1/1‑20 (MQ=255)                                                                                                                                                                                                                                                                  ggAACAAGTCGCCCTCggcgttgctggtctgtggtcggcgtgggtactggtgcctctggccattatcctcgtgccatttaactttgcgcctatgcgtaagtcgatgatttccgcgccggtatttcgcggt                                                                                                                                                              <  2:368658‑M1/130‑115 (MQ=255)                                                                                                                                                                                                                                                                   gAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCTCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATa                                                                                                                                                                   >  1:15289/1‑124 (MQ=255)                                                                                                                                                                                                                                                                       aaGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCTCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGgcg                                                                                                                                                               <  2:15289/124‑1 (MQ=255)                                                                                                                                                                                                                                                                        aGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACa                                                                                                                                                                                                                                 >  1:370614/1‑57 (MQ=255)                                                                                                                                                                                                                                                                         gTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGTGGAAATCATCGACTTACGCATAGGCGCAAAGTTAAATGGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCNGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCGGATAAATAAGCTCACGCGGTGATAGAACAACGCGCAGAACAGGACa       >  1:522064/1‑274 (MQ=255)                                                                                                                                                                                                                                                                           cGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATa                                                                                                                                                                   >  2:630454/1‑116 (MQ=255)                                                                                                                                                                                                                                                                            gCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATcgg                                                                                                                                                                                                                             <  2:370608/57‑1 (MQ=255)                                                                                                                                                                                                                                                                             cccTCCCACCAGGTTGTGCCCGCCTCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGGCGCAAAGTTAAATGGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGTGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTGATAGAACAACGCGCCGAGCAGGACAACCGt  <  1:242049/275‑1 (MQ=255)                                                                                                                                                                                                                                                                               cTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGgcg                                                                                                                                                               <  1:630463/116‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                               TTTTTGCAGCACGCGAGACTGGGCATAAGCCGAGAACTCCAGCCCGCCGTACTCTTTTTTGATGATCATCGCGAAGAAACGATGCTCTTTAAGGTACGCCCACAACTCCGGCGGCAGATCCGCCAGCTCATGGGTGATCTGGAAATCATTCGCCATCCGGCAGGCTTCTTCTACCGGGCCGTCGAGAAACGCTTGCTCTTCGGCGGTCAGGCGCGGCTGCGGATAGTTATGCAGCTTTTTCCAGTCCGGCTTGCCCTGGAACAAGTCGCCCTCCCACCAGGTGGTGCCCGCATCAATCGCTTCTTTCTCAGTGCGCGACATCGGCGGCATCACCTTACGGAAACCGCGAAATACCGGCGCGGAAATCATCGACTTACGCATAGGCGCAAAGTTAAATGGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTGATAGAACAACGCGCCGAGCAGGACAACCGT  >  CP009273/239224‑239766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.