New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	356557 =	29 (0.750)	6 (0.160)	4/302	NT	16.9%	coding (855/1155 nt)	cynX	putative cyanate transporter
	?	CP009273	356650 =	31 (0.840)					coding (948/1155 nt)	cynX	putative cyanate transporter

TCCCCGCGCGTGGACGCTGGGTGTTTACTTCGGTCTGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCA  >  CP009273/356287‑356801                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                      caagttcagcgatctacattagccgcatacggcatgaacaaagcgcaggaacaagcgtcgcatcatgcctctttgacccacagctgcggcaaacgtactggtgcaaaacgcagggttatgatcatcagcccaacgacgcacagcgcatgaaatgcccagtccatgaggtaattgccgctgatantactcagcacgccagacaaccacggggccagcccggcgatgataaaaccgcttccctgcataaacgccaccagcttgccagccataCCCg                                                                                                                                                                                                                                                    <  1:537064‑M1/4‑1 (MQ=255)                          ttcTTCGGTGTGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTATCCGCTTTCTATAGTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGt                                                                                                                                                                                                                           <  1:272879/272‑1 (MQ=255)                                    tGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGAGTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTggg                                                                                                                                                                                                                 <  1:104279/274‑1 (MQ=255)                                                gTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTTGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGttt                                                                                                                                                                                                       >  1:416335/1‑272 (MQ=255)                                                                    tGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGgcggt                                                                                                                                                                                >  1:164930/1‑273 (MQ=255)                                                                                                  gtaaGCGAGCAGTTGAGTGGTTTTNTGCTGGCAGGGATGCCGCGTGTGTAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTgg                                                                                                                                                  <  2:416328/272‑1 (MQ=255)                                                                                                        caaaacgcagggttatgatcatcagcccaacgacgcacagcgcatgaaatgcccagtccatcaggcaattgccgctgctactacgcagcacgccagaaaaccacggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGt                                                                                                                                                                                                                                                  <  1:14031‑M1/6‑1 (MQ=255)                                                                                                            aGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCNGGATCGGCNCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTACAACCGGCTATTGCTGGCAAGCtggt                                                                                                                                         <  1:462624/274‑1 (MQ=255)                                                                                                                        ccTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCa                                                                                                                             >  1:242533/1‑274 (MQ=255)                                                                                                                            atcagcccaacgacgcacagcgcatgaaatgcccagtccatcaggtaattgccgctgatactacgcagcacgccagaaaaccacggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGt                                                                                                                                                                                                                                                  <  1:74641‑M1/6‑1 (MQ=255)                                                                                                                                      atgaCGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTTTTAATGCTGGCGCTTGTATTACCACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGgtgtg                                                                                                                                                                                                                                <  1:54510/161‑1 (MQ=255)                                                                                                                                                         cAGGAGCGTTGCTGATGGCTTCTATGGCTGGCCATAAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTGCTGCGGCTTTATCCGGCTGCCGATGCAATTGCCGATATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCACTGTTTGCTGCTCGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCg                                                                                          <  1:135279/275‑1 (MQ=255)                                                                                                                                                                              agaTGGCTCGGCATCAGGTTCGGCGCATGCTGTTGATGCGGGCGTTGGTGTTACTCCTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCg                                                                      <  1:966/272‑1 (MQ=255)                                                                                                                                                                                             aGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTAtggtgg                                                                                                                                                                                                                                           >  2:143493/1‑95 (MQ=255)                                                                                                                                                                                               gcacgccagaaaaccacggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                              <  1:423871‑M1/74‑1 (MQ=255)                                                                                                                                                                                                 tCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGa                                                                                                                                                                                                                                       <  1:143494/95‑1 (MQ=255)                                                                                                                                                                                                   gccagaaaaccacggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCa                                                                                                                                                                          >  2:423864‑M1/77‑154 (MQ=255)                                                                                                                                                                                                         aaCTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGtt                                                                                                                                                                                                                          >  1:360467/1‑100 (MQ=255)                                                                                                                                                                                                         aaCTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGGGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCGCGATCACTCTGTGCAACCGGCTATTGCTGGCCAGCTGGTGGCGGTTGTGCAGTGATTCGGTTTTAGCATCGCCGGGCTTGTGCCGGTGGTTTGC‑GGCTTGCTGCGTATTATCAGCgtccagtgnctc                                                >  2:256654/1‑258 (MQ=255)                                                                                                                                                                                                             gtgaaTGCTGGCGCTGGTGTTACAGCGGGTGGGGTTCTGCGGCTTTATCGGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGt                                                                                                                                                                                                                      <  2:360461/97‑1 (MQ=255)                                                                                                                                                                                                                  ggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGt                                                                                                                                                                                                                                                  <  2:333740‑M1/6‑1 (MQ=255)                                                                                                                                                                                                                      ggCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGgcgc                                                                                                                                                                                 >  2:85105/1‑128 (MQ=255)                                                                                                                                                                                                                          cTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGa                                                                                                                                                                             <  1:85106/128‑1 (MQ=255)                                                                                                                                                                                                                           aggTGTTTGAATTGGGGGGGTTCGGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGTGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCt                         <  1:388052/273‑1 (MQ=255)                                                                                                                                                                                                                            ggTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCg                                                                                                                                                                                                    <  1:255065/103‑1 (MQ=255)                                                                                                                                                                                                                                  ataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                              <  2:126945‑M1/74‑1 (MQ=255)                                                                                                                                                                                                                                      aaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCa                                                                                                                                                                          >  1:126946‑M1/42‑119 (MQ=255)                                                                                                                                                                                                                                       tggtggGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGGTTATGCATGGAATCGGTTTTATCATCGNCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGAATTTCATGCGCTGTGCGCCGTTgg             >  1:544369/1‑274 (MQ=255)                                                                                                                                                                                                                                        ggtggGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTggg            >  1:92083/1‑274 (MQ=255)                                                                                                                                                                                                                                             tccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                              <  1:660425‑M1/74‑1 (MQ=255)                                                                                                                                                                                                                                                 tgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCa                                                                                                                                                                          >  2:660416‑M1/31‑108 (MQ=255)                                                                                                                                                                                                                                                 cTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑ccc                                                                                            >  1:295552/1‑185 (MQ=255)                                                                                                                                                                                                                                                 cTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGc                                                         >  1:575378/1‑220 (MQ=255)                                                                                                                                                                                                                                                  tggggCTTTAGCTGGGTGCTGTTGCACTGGCCTGTATTGTGGGCGGTGGTGTGTGGGTTAGGTGTGGGGGGCGCGTTTCCGGTCTGTTTGCGGCTGGCGCTTGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCa  <  2:242528/271‑1 (MQ=255)                                                                                                                                                                                                                                                     ggCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCTCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTg                                                                                        <  2:295546/185‑1 (MQ=255)                                                                                                                                                                                                                                                            tCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGc                                                         >  2:324610/1‑209 (MQ=255)                                                                                                                                                                                                                                                                gCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAAtt                                                     <  1:324616/209‑1 (MQ=255)                                                                                                                                                                                                                                                                 cTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑c                                                                                              >  2:480987/1‑167 (MQ=255)                                                                                                                                                                                                                                                                     cGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCg                                                                                          <  1:480994/167‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                      TCCCCGCGCGTGGACGCTGGGTGTTTACTTCGGTCTGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTG‑CCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCA  >  CP009273/356287‑356801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.