New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 486367	27 (0.700)	5 (0.140)	4/298	NT	15.0%	coding (30/378 nt)	ybaN	DUF454 family inner membrane protein
	?	CP009273	= 487543	31 (0.850)					intergenic (+124/‑5)	apt/dnaX	adenine phosphoribosyltransferase/DNA polymerase III/DNA elongation factor III, tau and gamma subunits

AGCCTGTAGTGTTGTCGCACGAGTCTGAAAAAGATGCCTGTCGAAACGAGCACTTAGCGTGGCGAACTGTGACACCGGGGCACAACGCTGACGCAGCGTAGCGAGCTGTCCTTCCAGTTTTTCCAGCAGCAGGGCGGTTTTCACGATAAGACCTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACCGCGGGCGATTTTGCTTATTTTGCTCACGTTTGCCATTTCTCTGTGGTTCGTCCAGATGCCATGGGTGCGCATCAT  >  CP009273/486125‑486636                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                              aGCCTGTAGTGTTGTCGCACGAGTCTGAAAAAGATGCCTGTCGAAACGAGCACTTAGCGTGGCGAACTGTGACACCGGGGCACAACGCTGACGCAGCGTAGCGAGCTGTCCTTCCAGTTTTTCCAGCAGCAGGGCGGTTTTCACGATAAGACCTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGt                                                                                                                                                                                                                                               <  1:97128/275‑1 (MQ=255)       tAGTGTTGTCGCACGAGTCTGAAAAAGATGCCTGTCGAAACGAGCACTTAGCGTGGCGAACTGTGACACCGGGGCACAACGCTGACGCAGCGTAGCGAGCTGTCCTTCCAGTTTTTCCAGCAGCAGGGCGGTTTTCACGATCAGACCTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTACGCTGACAACACTCAATATGCAACGAATCCTTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCATCGCGTggtatc                                                                                                                                                                                                                                         >  2:33446/1‑274 (MQ=255)                                                                                                             tCCTTCCAGTTTTTCCAGCAGCAGGGCGGTTTTCACGATAAGAACTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGACGTGGTATTACCGGTATTANCGACGACGCCGTTTATCATGCTGGCGGCCTGGTGCTTTGTCCGTTCTTCCCCGCGCTTTCACGCCTGGATGCTGTACCGCTCATGGTTggg                                                                                                                                   >  1:562899/1‑275 (MQ=255)                                                                                                                ttCCAGTTTTTCCAGCAGCAGGGCGGTTTTCACGATAAGACCTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAg                                                                                                                                <  1:33446/275‑1 (MQ=255)                                                                                                                                                        ccTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTAATCTGACAACACTCAATATGCAACGAATCATTTTAAGCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAAca                                                                                                        <  1:359311/259‑1 (MQ=255)                                                                                                                                                                   aTGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCaggctctgaaacgctggaaggtggattcacgaaggggtaatgctaacacagccccgtcagaacggcgaggctgaatgcacatcttgtgctgtccgtagcgtgggcagcacaagactggcgataattaatggcccgggaacgggacaaggctg                                                                                                                       >  2:190693‑M1/1‑81 (MQ=255)                                                                                                                                                                   aTGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCaggctctgaaacgctggaaggtggattcacgaag                                                                                                                                                                                                                                             >  2:709888‑M1/1‑81 (MQ=255)                                                                                                                                                                      atttttttttttcTAAAGTAGCTTCTTTGTAAGCTTACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACcgcg                                                                          <  1:145130/263‑1 (MQ=255)                                                                                                                                                                       tAATTGTTATGCTAAAGTCGCCACTCTGTAAGCTGACAACACTCAATNTGCAACGAATCATTTTAATCATCATTGGCaggctctgaaacgctggaaggtggattcacgaaggggtaatgctaacacagccccgtcagaacggcgaggctgaatgcacatcttgtgctgtccgtagcgtgggcagcacaagactggcgataatcaatgtcccgggaacgggacaaggctgta                                                                                                                     <  1:507147‑M1/231‑155 (MQ=255)                                                                                                                                                                       tAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCaggctctgaaacgctggaaggtggattcacgaaggggtaatgctaacacagccccgtcagaacggcgaggctgaatgcacatcttgtgctgtccgtagcgtgggcagcacaagactggcgataattaatggcccgggaacgggacaaggctgtagc                                                                                                                   <  1:190696‑M1/233‑157 (MQ=255)                                                                                                                                                                       tAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCaggctctgaaacgctggaaggtggattcacgaaggggt                                                                                                                                                                                                                                         <  1:709898‑M1/115‑39 (MQ=255)                                                                                                                                                                            gTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCttt                                                                                                                                                                   >  1:37164/1‑180 (MQ=255)                                                                                                                                                                                tGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACg                                                                                                                                                               <  2:37164/180‑1 (MQ=255)                                                                                                                                                                                tGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTTGCCGAAACATCATGCGATGCCGCCNTGCTGAAAACcgcgttctaattc                                                                 >  2:420535/1‑265 (MQ=255)                                                                                                                                                                                  cTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACCGCGGGCGATTTTGCt                                                              >  1:38726/1‑275 (MQ=255)                                                                                                                                                                                    aaaGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAAcc                                                                             <  1:420542/258‑1 (MQ=255)                                                                                                                                                                                          gCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGc                                                                                                                                                                                                                                                               >  1:174234/1‑74 (MQ=255)                                                                                                                                                                                              ctctGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTggg                                                                                                                                                                                                                                                           <  2:174231/74‑1 (MQ=255)                                                                                                                                                                                                      gtgtgtacgngtCAAGATGCACCCATTCATTTTAATCGGTCTTTGCTTGCTGGCGGGATTGCGGGGTACGCTGGGCGTGGTATTACCGGTCTTACCGCCGCCGCCGTTTACGCTGCTGGCGGCCGGTTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACCGCGGGCGATTTTGCTTATTTTGCTCACGTTTGCCa                                          <  2:265350/264‑1 (MQ=255)                                                                                                                                                                                                         gACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGc                                                                                                                                                                                                                                                      >  2:658691/1‑68 (MQ=255)                                                                                                                                                                                                         gACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACcg                                                                            >  1:53881/1‑238 (MQ=255)                                                                                                                                                                                                             acacTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTggg                                                                                                                                                                                                                                                  <  1:658700/68‑1 (MQ=255)                                                                                                                                                                                                             acacTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACcga                                                                                                                                                                                                                           >  1:160477/1‑91 (MQ=255)                                                                                                                                                                                                             acacTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCAc                                                                                                                                                                >  1:280976/1‑150 (MQ=255)                                                                                                                                                                                                                 tCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCgacgac                                                                                                                                                                                                                       <  2:160474/91‑1 (MQ=255)                                                                                                                                                                                                                 tCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCt                                                                                                                                                            <  2:280971/150‑1 (MQ=255)                                                                                                                                                                                                                    ttatCCAACGACTCATTTTACTCATCATTGGCTGGCTGGCGGTAGTCCTGGGTACGCTGGGCGTGGTTTTACCGGTATTACCGACGACGCCGCTTATCCTGCCGGCGGCCGGGTGCTTAGCCCGTTTTTCTTCGCGCTCTCATGCATGCGTCATGTGCCGCTCATGCTTTGGCACCTATCTACGTTTCTGCCCGCAACATAATGAGATGCCGACCGGCGTCCCACAGCAGTCGATTTTTCTCATGTTGATACGGTTAGCCATCTCGGTGTGGtgg                            >  2:158052/2‑273 (MQ=255)                                                                                                                                                                                                                    atatGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTcc                                                                                                                                                                            >  2:363256/1‑131 (MQ=255)                                                                                                                                                                                                                        gCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCcgc                                                                                                                                                                        <  1:363262/131‑1 (MQ=255)                                                                                                                                                                                                                           aCGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACCGCGGGCGATTTTGCTTATTTTGCTCACGTTTGCCATTTCTCTGTGGttgtctctt                      >  1:265355/1‑267 (MQ=255)                                                                                                                                                                                                                               aTCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTggg                                                                                                                                                                                                                                                           >  2:246190/1‑41 (MQ=255)                                                                                                                                                                                                                                   ttttAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACg                                                                                                                                                                                                                                                       <  1:246195/41‑1 (MQ=255)                                                                                                                                                                                                                                              atTGGCaggctctgaaacgctggaaggtggattcacgaaggggtaatgctaacacagccccgtcagaacggcgaggctgaatgcacatcttgtgctgtccgtagcgtgggcagcacaagactggcgataattaatggcccgggaacgggacaaggctgtagctggtaatgccctgtttttcgagacgctgttcgccgccgagatcgaacaggttgataatgaacgcagcgtcagccacttcaccacccagacgacggatacgtttaacggtcgct  >  1:178339‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                              AGCCTGTAGTGTTGTCGCACGAGTCTGAAAAAGATGCCTGTCGAAACGAGCACTTAGCGTGGCGAACTGTGACACCGGGGCACAACGCTGACGCAGCGTAGCGAGCTGTCCTTCCAGTTTTTCCAGCAGCAGGGCGGTTTTCACGATAAGACCTCAATGAAAATGATAATTGTTATGCTAAAGTAGCCACTCTGTAAGCTGACAACACTCAATATGCAACGAATCATTTTAATCATCATTGGCTGGCTGGCGGTAGTGCTGGGTACGCTGGGCGTGGTATTACCGGTATTACCGACGACGCCGTTTATCCTGCTGGCGGCCTGGTGCTTTGCCCGTTCTTCCCCGCGCTTTCACGCCTGGTTGCTGTACCGCTCATGGTTTGGCAGCTATCTACGTTTCTGGCAGAAACATCATGCGATGCCGCGCGGCGTCAAACCGCGGGCGATTTTGCTTATTTTGCTCACGTTTGCCATTTCTCTGTGGTTCGTCCAGATGCCATGGGTGCGCATCAT  >  CP009273/486125‑486636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.