New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 665422	23 (0.600)	4 (0.110)	4/298	NT	11.5%	coding (607/642 nt)	nadD	nicotinic acid mononucleotide adenylyltransferase, NAD(P)‑dependent
	?	CP009273	= 666176	40 (1.100)					coding (886/1032 nt)	holA	DNA polymerase III, delta subunit

TGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCATTGTCGAGTATCGTTTCGTATTCGTACCAGGTCGGAAA  >  CP009273/665207‑665689                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                            tGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCACTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTGACCGTTTTGCANTCTTTCACTgatta                                                                                                                                                                                                                  >  2:521799/1‑273 (MQ=255)           aggATAAAAAGAGNCCCCTTGTAGAAGCGTGTGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCg                                                                                                                                                                                                         <  2:525752/272‑1 (MQ=255)                        acacCATGTAGCAGCGTATGCAGATTTTACGCTTGCTCAATACCGCGCGCGGTCAGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAANGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTc                                                                                                                                                                                                             >  1:525759/1‑257 (MQ=255)                                                                                        gcgcATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGacgcagttacgtcaggccgtgcaactcctgacacgaacggaactcaccttcaaacaagattacggtcagtcagtgtgggcagagctggaag                                                                                                                                                                                  >  1:381892‑M1/1‑129 (MQ=255)                                                                                            aTGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGacgcagttacgtcaggccgtgcaactcctgacacgaacggaactcaccctcaaacaagattacggtcagtcagtgtgggcagagctggaagggtt                                                                                                                                                                              <  2:381886‑M1/220‑96 (MQ=255)                                                                                                           aCCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATTCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATTGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTg                                                                                                        >  1:308371/1‑275 (MQ=255)                                                                                                           aCCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCg                                                                                                                                                                                                            >  1:340284/1‑175 (MQ=255)                                                                                                             cATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGacgcagttacgtcaggccgtgcaactcctgacacgaacggaactcaccctcaaacaagattacggtcagtcagtgtgg                                                                                                                                                                                               >  1:623431‑M1/1‑108 (MQ=255)                                                                                                              aTCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGTCAATAAATCCTCACATGATTCACCGTGTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGCCGTTTCAGACAGCTAAATTTTACCGGCAGTCTGTAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCATCCATTGCTg                                                                                                     >  1:340837/1‑275 (MQ=255)                                                                                                               tCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCga                                                                                                                                                                                                        <  2:340278/175‑1 (MQ=255)                                                                                                                 gATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGacgcagttacgtcaggccgtgcaactcctgacacgaacggaactcaccctcaaacaagattacggtcagtcagtgtgggcag                                                                                                                                                                                           <  2:623422‑M1/186‑83 (MQ=255)                                                                                                                       cGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAAtttt                                                                                                                                                                    >  1:682673/1‑203 (MQ=255)                                                                                                                           tGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCg                                                                                                                                                                <  2:682664/203‑1 (MQ=255)                                                                                                                                  cACCATGACGAATTAACCACAGTCGCATCATGCCATCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGNTAAATTTTNCCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCa                                                                                    >  1:463443/1‑272 (MQ=255)                                                                                                                                                                      ccGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCga                                                                                                                                                                                                        >  1:298893/1‑120 (MQ=255)                                                                                                                                                                          aaCGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATg                                                                                                                                                                                                    <  2:298887/120‑1 (MQ=255)                                                                                                                                                                                 ggTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGgatg                                                                                                                                                                                                                   >  2:631589/1‑98 (MQ=255)                                                                                                                                                                                 ggTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTATCGGCAGGCTGAAGGTGCAGATCTTCCGGGTTATGGGTCAAATGATCTTCCAGCCATTGCTGGTATTACGttt                                                                                          >  1:621966/1‑219 (MQ=255)                                                                                                                                                                                     tCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATgg                                                                                                                                                                                                               <  1:631598/98‑1 (MQ=255)                                                                                                                                                                                            tACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCa                                        <  2:164491/258‑1 (MQ=255)                                                                                                                                                                                            tACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCa                                        >  1:164494/1‑258 (MQ=255)                                                                                                                                                                                            tACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAAGGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCg                                                           >  1:402846/1‑239 (MQ=255)                                                                                                                                                                                                       gaggTTAATTGAAGTCAGTACCTGTTCCGGAAATAATCCCTAACTTGTTTCAGCTTTTTGAAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACTGCGTGTAAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCGTCCAGCCAGTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCATTGTCGAGTATCGTttcgtattcgta              <  2:82667/271‑1 (MQ=255)                                                                                                                                                                                                        tgGTTTATGNAAGTCAGTCCCGGTTCCGGCAATAAATCCTCACATGATTCACCGGTTTGCAAACGTTCGCGGATGATGTTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCATTGTCGAGTATCGTTTCGTATTCGTACCa           <  2:263221/275‑1 (MQ=255)                                                                                                                                                                                                         ggTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGtt                                                                                                                                                                                     >  2:93027/1‑104 (MQ=255)                                                                                                                                                                                                             aaTGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAg                                                                                                                                                                                 <  1:93028/104‑1 (MQ=255)                                                                                                                                                                                                               tGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCANGGCGTTTCAGCCAGATAACTTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCTCATGTGCATTGTCGAATATCGTTTCGTATTCGTACCAGGTCGGa    <  1:521806/275‑1 (MQ=255)                                                                                                                                                                                                                    gTCAGTACCGGTTCCGGCAATAAATCCTCACATGCTTCACCGTTTTTCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATATTCCAGCCATTGCTGGTATCGCGGTTGCGCCATTTAAAGTGGGTAACCTGGACGCCGACAGCCGATCAAATGTGAATTGACGATAATAGTTTCTGATTCGTACCAGGTCGGaag  >  1:380139/1‑271 (MQ=255)                                                                                                                                                                                                                    gTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCATTGTCGAGTATCGTttcgtatt                  >  1:82668/1‑256 (MQ=255)                                                                                                                                                                                                                       aGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGgatga                                                                                                                                                                                                                  >  1:289094/1‑61 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                            TGCATAAAACCAGATCAAAGGAAACACCATGTAGCAGCGTATGCAGATTTTGCGCTTGCTCAATACCGCGCGCGGTCAGGGGGGTGGGCGCATGACCGCTGTAAAGACCATCGATATTCGCTTGCGTTTCACCATGACGAATTAACCACAGTCGCATCATGCCCTCCGTAACGACAGGTATCAGCGATACAAGCCTTGTTGGTTAATGTAAGTCAGTACCGGTTCCGGCAATAAATCCTCACATGATTCACCGTTTTGCAAACGTTCGCGGATGATGGTCGCCGAGATGTTAAACCACGGCGTTTCAGCCAGATAAATTTTACCGGCAGGCTGAAGGTGAAGATCTTCCGGGTTATGTGTCAAATGATCTTCCAGCCATTGCTGGTATTGCGGTTGCGCCATTTCAAGTGGGTAACCTGGACGCCGACAGACGATCAAATGTGCATTGTCGAGTATCGTTTCGTATTCGTACCAGGTCGGAAA  >  CP009273/665207‑665689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.