New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 762237	32 (0.830)	5 (0.140)	5/292	NT	19.7%	coding (798/1977 nt)	mngA	fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component
	?	CP009273	= 762358	11 (0.310)					coding (919/1977 nt)	mngA	fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component

CTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGAT  >  CP009273/761975‑762465                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                     ctTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGGGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCAGTTtcagacccgttt                                                                                                                                                                                                                          >  1:192971‑M1/1‑263 (MQ=255)                       cGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGGGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTTTTgccgagccga                                                                                                                                                                                                                            >  1:64461/1‑251 (MQ=255)                                                                  aggaagaggaaaTAACGGGAAAAGGTAGGAGGAAAACTCGGCGTAAATGTTTAGGTTGAAAAACAAGGCTCTAACGGGATTGAAGGGAGTTTAAAGGTGGATCAACTCAAGAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGcgtaccg                                                                                                                                                          <  2:339971/264‑1 (MQ=255)                                                                      cTGCGGAATATCTGGAAAACGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGCGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCCTTGATTcaacaa                                                                                                                                                                                               >  1:581642/1‑233 (MQ=255)                                                                        gCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTAccc                                                                                                                                                                                     >  1:37838/1‑241 (MQ=255)                                                                         cGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAATGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATcc                                                                                                                                                                                                    >  1:300959/1‑225 (MQ=255)                                                                            aaTATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCaa                                                                                                                                                                                 <  2:37838/241‑1 (MQ=255)                                                                                          gCCGGACGCAAACTCGGCGTANATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGACGAGCTGATTCGCGATGCAGAAGCGTTGa                                                                                                                                                                                                       <  1:496181/205‑1 (MQ=255)                                                                                                      gtttgcggaaacttttccgttgaaaaccaAGGCGCTAACGGCATTGATGTTCGTTTTACGGCGGATCTACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGGGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTtcagctccgttttgacacttttccccggttgcgtatcttgctgtacggtacgcgtctcatcgctacgcttgagggtaagcgcttgttggatcaacgcttctgcatggcgaatc                                                                                                                     <  2:192968‑M1/262‑114 (MQ=255)                                                                                                        cGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAg                                                                                                                                                                                >  2:300012/1‑214 (MQ=255)                                                                                                            gTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTa                                                                                                                                                                            <  1:300018/214‑1 (MQ=255)                                                                                                                                      cgcTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTtcagctccgttttgacacttttcaccggttgcgtatcttgctgtacggtacgcgtctcatcgctacgcttgagggtaagcg                                                                                                                                                     >  1:600675‑M1/1‑130 (MQ=255)                                                                                                                                      cgcTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATc                                                                                                                                                                                                     >  1:91660/1‑163 (MQ=255)                                                                                                                                          aaCGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTtcagctccgttttgacacttttcaccggttgcgtatcttgctgtacggtacgcgtctcatcgctacgcttgagggtaagcgcttg                                                                                                                                                 <  2:600666‑M1/211‑86 (MQ=255)                                                                                                                                          aaCGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCcaac                                                                                                                                                                                                 <  2:91659/163‑1 (MQ=255)                                                                                                                                                                   cggATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATcc                                                                                                                                                                                                    >  1:406619/1‑135 (MQ=255)                                                                                                                                                                     gATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAg                                                                                                                                                                                              >  2:704688/1‑139 (MQ=255)                                                                                                                                                                       tCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCcaaca                                                                                                                                                                                                <  2:406612/135‑1 (MQ=255)                                                                                                                                                                         aaCTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCt                                                                                                                                                                                          <  1:704698/139‑1 (MQ=255)                                                                                                                                                                                     cAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTCACGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTAATTGTCGCGGGGGGCACGGGGCTGGAGGtg                                      >  1:670937/1‑274 (MQ=255)                                                                                                                                                                                         cGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGATAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGcc                                                                             <  1:688730/232‑1 (MQ=255)                                                                                                                                                                                                    ttGCGGCTGAAGTCGCCATCACGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTCCCGAGCCGATTCGCCCTGCAGAAGCGTTTATCCAACAAGCGCTTAc                                                                                                                                                                                       >  2:210705/1‑115 (MQ=255)                                                                                                                                                                                                        ggCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTc                                                                                                                                                                                   <  1:210709/115‑1 (MQ=255)                                                                                                                                                                                                             aaGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTtcagctccgttttgacacttttcaccggttgcgtatcttgctgtacggtacgcgtctcatcgctacgcttgacagtatccgcttgtgggatcaacgcttctg                                                                                                                                <  1:494780‑M1/161‑103 (MQ=255)                                                                                                                                                                                                                         aGGAGAGTGAGAGTTTTAATGGAATTCCCGCGATTTTAGTGCAGGGGGCCGAGGCGATTCGACATGCAGAAGCGTTGAGCAAACAAGCGAGTAACCTCAAGCGTAGCGATGAGACGCGTACGTTACAGTAAGCGACGCAACCGGTGAAAAGTGGCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGAt  <  1:636567/275‑1 (MQ=255)                                                                                                                                                                                                                                tGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTgccgagccga                                                                                                                                                                                                                            >  2:109510/1‑50 (MQ=255)                                                                                                                                                                                                                                tGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATcc                                                                                                                                                                                                    >  1:603927/1‑74 (MQ=255)                                                                                                                                                                                                                                  aGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTgccga                                                                                                                                                                                                                                 >  1:456223/1‑43 (MQ=255)                                                                                                                                                                                                                                    cGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCg                                                                                                                                                                                                                        <  1:109511/50‑1 (MQ=255)                                                                                                                                                                                                                                    cGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCcaaca                                                                                                                                                                                                <  2:603918/74‑1 (MQ=255)                                                                                                                                                                                                                                      ttttAATGGCATTCCCGCGCTTTCAGTGCCTGTTgccgagccg                                                                                                                                                                                                                             <  2:456216/43‑1 (MQ=255)                                                                                                                                                                                                                                                 ttCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAg                                                                                                                                                                           >  2:465347/1‑82 (MQ=255)                                                                                                                                                                                                                                                 ttCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTgg                                           >  1:313835/1‑210 (MQ=255)                                                                                                                                                                                                                                                     cgcgCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAATAAGCGCTTACCCTCAAGCGTAGCGAt                                                                                                                                                                       <  1:465354/82‑1 (MQ=255)                                                                                                                                                                                                                                                     cgcgCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGt                                       <  2:313829/210‑1 (MQ=255)                                                                                                                                                                                                                                                       cgcTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAg                                                                                                                                                                                              >  2:224391/1‑57 (MQ=255)                                                                                                                                                                                                                                                           ttCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCt                                                                                                                                                                                          <  1:224396/57‑1 (MQ=255)                                                                                                                                                                                                                                                                  ccTGTTtcagctccgttttgacacttttcaccggttgcgtatcttgctgtacgg                                                                                                                                                                                      >  1:24882‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                                  ccTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATg                                                                                                                                                                      >  2:511333/1‑70 (MQ=255)                                                                                                                                                                                                                                                                      tttcagctccgttttgaaacttttcaccggttgcgtatcttgctgtacggtacg                                                                                                                                                                                  <  2:24882‑M1/54‑53 (MQ=255)                                                                                                                                                                                                                                                                      ttGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACACGCGCTTAACCTCACGCGTAGCGATGAGAc                                                                                                                                                                  <  1:511340/70‑1 (MQ=255)                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                     CTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGAT  >  CP009273/761975‑762465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.