| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 762237 | 32 (0.830) | 5 (0.140) | 5/292 | NT | 19.7% | coding (798/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| ? | CP009273 | = 762358 | 11 (0.310) | coding (919/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component | |||||
CAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGATCTGTTTAATGAAGAAAACTCCTGGCTGTGGATGTACCGCAAGCTGGGCGGCGGGCTGCTCGGAATTTTGATGGTACCGGTGCTCGCGGCCTATACCGCCTATTCTCTGGCAGATAAACCGGCGTTAGCGCCAGGCTTTGCGGCTGGACTTGCCGCC > CP009273/762155‑762621 | cAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTCACGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTAATTGTCGCGGGGGGCACGGGGCTGGAGGtg > 1:670937/1‑274 (MQ=255) cGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGATAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGcc < 1:688730/232‑1 (MQ=255) aGGAGAGTGAGAGTTTTAATGGAATTCCCGCGATTTTAGTGCAGGGGGCCGAGGCGATTCGACATGCAGAAGCGTTGAGCAAACAAGCGAGTAACCTCAAGCGTAGCGATGAGACGCGTACGTTACAGTAAGCGACGCAACCGGTGAAAAGTGGCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGAt < 1:636567/275‑1 (MQ=255) ttCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTgg > 1:313835/1‑210 (MQ=255) cgcgCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGt < 2:313829/210‑1 (MQ=255) gaTTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGGGAAAAGTGTCAAAACGGAGCTGAaacaggcactgaaagcgcgggaatgccattaaaacgctcaccctccttgatggcgacttcagccgcaaaaatacaggcggttgcactattgagtagatccgccgtaaaacgaacatcaatgccgttagcgccttggttttcaacggaaaagtttccgcaaac < 2:192968‑M2/275‑163 (MQ=255) aTTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAg > 2:664013/1‑128 (MQ=255) gtcacaaagaaGAAGCTGTGGTCCAAAAACTGCTTACCCTCAAGAGGTGGACTGTAACGCGTACAGTGAGTCAGGATACGCAACCGTTGAAAAGTGGCAAAACGGAGTTGAAACAGGCGCTGTTGAGCGGAATGTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTAGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGATCTGTTTAATGAAGAAAACTCCTGGCTGTGGATGTACCTCTAGCTGGGCGGCGGgct < 2:670928/264‑1 (MQ=255) gCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGa < 1:664022/128‑1 (MQ=255) cAGAAGCGTTGATCCCACAAGCGGATACTGTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAaacaggcactgaaagcgcgggaatgccattaaaacgctcactctccttgatggcgactt < 1:494780‑M2/161‑60 (MQ=255) caaGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAaacaggcactgaaagcgcgggaatgccattaaaacgctcactctccttgatggcgacttcagccgcaaaaatacaggcggttgcactattgagttgatccgccgttaaacgcccttcaatgccgtt < 2:600666‑M2/211‑127 (MQ=255) cgcTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAaacaggcactgaaagcgcgggaatgccattaaaacgctcactctccttgatggcgacttcagccgcaaaaatacaggcggttgcactattgagttgatccgccgttaaacgcccttcaatgccgttagcg > 1:600675‑M2/1‑81 (MQ=255) tACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTAc < 1:432407/179‑1 (MQ=255) aCGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGc > 1:523715/1‑86 (MQ=255) cgtaccgtacAGCAAGATACGCAACCGGTGAAAAGTTTCAAAACGGAGCTGAaa < 2:24882‑M2/54‑3 (MQ=255) gtaccgtacAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTa < 2:523708/86‑1 (MQ=255) ccgtacAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAaacagg > 1:24882‑M2/1‑48 (MQ=255) cAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGATCTGTTTAATGAAGAAAACTCCTGACTGTGGATGTACCGCAAGCTGGGCGGCGGGCTGCTCGGAATGTTGATGGTACCGTTGCTCGCGGCCTATACCGCCTATTCTCTGGCAGATAAACCGGCGTTAg > 1:448497/1‑274 (MQ=255) aaaCGGGTCTGAaactggcactgaaagcgcgggaatgccattaaaacgctcaccctccttgatggcgacttcagccgcaaaaatacaggcggttgcactattgagttgatccgccgttaaacgcccttcaatgccgttagcgccttgtttttcaacgtaaacatttacgccgagtttgcgtccggctttttccagatattccgcagccatataggtgtgagcaatacccgccggacaggccgttacgcagacgatagttggcgcgttggaaaaag > 1:192971‑M2/1‑12 (MQ=255) | CAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGCGTTTTAATGGCATTCCCGCGCTTTCAGTGCCTGTTGCCGAGCCGATTCGCCATGCAGAAGCGTTGATCCAACAAGCGCTTACCCTCAAGCGTAGCGATGAGACGCGTACCGTACAGCAAGATACGCAACCGGTGAAAAGTGTCAAAACGGAGCTGAAACAGGCACTGTTGAGCGGAATCTCTTTTGCCGTACCGTTGATTGTCGCGGGGGGCACGGTGCTGGCGGTCGCGGTATTACTGTCGCAAATCTTCGGGCTACAAGATCTGTTTAATGAAGAAAACTCCTGGCTGTGGATGTACCGCAAGCTGGGCGGCGGGCTGCTCGGAATTTTGATGGTACCGGTGCTCGCGGCCTATACCGCCTATTCTCTGGCAGATAAACCGGCGTTAGCGCCAGGCTTTGCGGCTGGACTTGCCGCC > CP009273/762155‑762621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |