New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	827767 =	NA (NA)	5 (0.140)	4/300	NT	25.0%	noncoding (23/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	827816 =	15 (0.410)					noncoding (72/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACT  >  CP009273/827497‑827955                                                                                                                                                                                                                                                                               |                                                                                                                                                                                             tCGCCAGCAACGTGGAGGCGGGGAGCGTGGGCAAGGTGGTGGTCGCTGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCACACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAACCCTGCNGCTGCGCAGTAATCTTTTATGCCTGGCTATGCCCGTCATCAGGCTGCTGAACAAACGCAACACTGCCACATGCGCTACGCTTATCAGGccc                                                                                                                                                                                          >  1:488093/1‑274 (MQ=255)          ccGTGGCGGCGGCGGTTGTGGGCAATGTAGTGGTCGCTGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGTCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGTGCTATGCCCGTCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                                                                                                                 <  1:111209/274‑1 (MQ=255)                                           ctgcgcTCANCAGCCACCACGCCGTGGGGAAGGTGGCGCAAAATCTGGAAACGCGAAAACTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAGCCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAgg                                                                                                                                                <  2:270556/273‑1 (MQ=255)                                                                                                    aCCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGcc                                                                                                                                                                                           <  1:584009/175‑1 (MQ=255)                                                                                                                   gTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg                                                                                                                                                                                       >  1:215102/1‑164 (MQ=255)                                                                                                                       cgccgcCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGaa                                                                                                                                                                                   <  2:215098/164‑1 (MQ=255)                                                                                                                                   gATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGACCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTa                                                        <  1:438500/275‑1 (MQ=255)                                                                                                                                                     ctatagagaagtaacgtctcggtggcttatgggcggtaaaacagataaattttttcccgtgttctcaaattgctgacaagtgcttgttgtgaaatgccggatgcggcgtaaacgccttatccg                                                                                                                                                                                              >  2:7658‑M1/123‑123 (MQ=255)                                                                                                                                                                           tggcttatgggcggtaaaacagataaattttttcccgtgttctcaaattgctgacaagtgcttgttgtgaaatgccggatgcggcgtaaacgccttatccg                                                                                                                                                                                              >  2:447552‑M1/101‑101 (MQ=255)                                                                                                                                                                             cgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGcc                                                                                                                                              >  2:161492/1‑147 (MQ=255)                                                                                                                                                                                 aaCCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGAt                                                                                                                                          <  1:161495/147‑1 (MQ=255)                                                                                                                                                                                                 ataaattttttcccgtgttctcaaattgctgacaagtgcttgttgtgaaatgccggatgcggcgtaaacgccttatccGGCCTACGTGAACTCTGCAATATATTGAAt                                                                                                                                                                 <  1:27433‑M1/30‑1 (MQ=255)                                                                                                                                                                                                  tAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                                                                                                                              >  1:137311/1‑110 (MQ=255)                                                                                                                                                                                                     attttttcccgtgttctcaaattgctgacaagtgcttgttgtgaaatgccggatgcggcgtaaacgccttatccGGCCTACGTGAACTCTGCAATATATTGAATTTGc                                                                                                                                                             >  2:27433‑M1/75‑108 (MQ=255)                                                                                                                                                                                                      cTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATg                                                                                                                                                          <  2:137310/110‑1 (MQ=255)                                                                                                                                                                                                                tgttctcaaattgctgacaagtgcttgttgtgaaatgccggatgcggcgtaaacgccttatccGGCCTACGTGAACTCTGCAATATATTGaa                                                                                                                                                                  <  1:649633‑M1/29‑1 (MQ=255)                                                                                                                                                                                                                    ctcaaattgctgacaagtgcttgttgtgaaatgccggatgcggcgtaaacgccttatccGGCCTACGTGAACTCTGCAATATATTGAATTTg                                                                                                                                                              >  2:649624‑M1/60‑92 (MQ=255)                                                                                                                                                                                                                     aTGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg                                                                                                                                                                                             <  1:549471/60‑1 (MQ=255)                                                                                                                                                                                                                                           aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACt  <  1:343775/225‑1 (MQ=255)                                                                                                                                                                                                                                                  atgccggatgcggcgtaaacgccttatccGGCCTACATGGCCCATGCAATGTATTGAATTTg                                                                                                                                                              >  2:6962‑M1/30‑62 (MQ=255)                                                                                                                                                                                                                                                          ccTGATGCGCTACGCTTATCAGGCCTACGTGAActc                                                                                                                                                                                >  1:452565/1‑36 (MQ=255)                                                                                                                                                                                                                                                              aTGCGCTACGCTTATCAGGCCTACGTGAACTCTGCa                                                                                                                                                                            <  2:452558/36‑1 (MQ=255)                                                                                                                                                                                                                                                                           aTCAGGCCTACGTGAACTCTGCAATATATTGAAtt                                                                                                                                                                >  2:370327/1‑35 (MQ=255)                                                                                                                                                                                                                                                                           aTCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACg                                  >  1:174813/1‑161 (MQ=255)                                                                                                                                                                                                                                                                               GGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                                                                                                                            >  1:370333‑M1/1‑35 (MQ=255)                                                                                                                                                                                                                                                                               GGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTAc                              >  2:174810‑M1/1‑161 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                             TCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACT  >  CP009273/827497‑827955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.