New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	827767 =	NA (NA)	5 (0.140)	4/300	NT	25.0%	noncoding (23/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	827816 =	15 (0.410)					noncoding (72/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

GATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGG‑TTGCCAGCAAGAGCGCACG  >  CP009273/827627‑828073                                                                                                                                                                                              |                                                                                                                                                                                                                                                                   gATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGACCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTa                                                                                                                                                                               <  1:438500/275‑1 (MQ=255)                                               aaCCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGAt                                                                                                                                                                                                                                                                 <  1:161495/147‑1 (MQ=255)                                                                                                         aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACt                                                                                                                         <  1:343775/225‑1 (MQ=255)                                                                                                                                         aTCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACg                                                                                                                                                         >  1:174813/1‑161 (MQ=255)                                                                                                                                             GGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTAc                                                                                                                                                     >  2:174810‑M1/1‑161 (MQ=255)                                                                                                                                                            gcaaattcaatatattgcagagttcacgtaggccGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAAt                                                                                                                                                                                           >  2:27433‑M2/35‑108 (MQ=255)                                                                                                                                                             gCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGtt                                                                                                                                                       >  2:607450/1‑143 (MQ=255)                                                                                                                                                             caaattcaatatattgcagagttcacgtaggccGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTgag                                                                                                                                                                                                          >  2:649624‑M2/34‑92 (MQ=255)                                                                                                                                                             caaattcaatacattgcatgggccatgtaggccGGATAAGGCGTTTACGCCGCATCCGGCAt                                                                                                                                                                                                                                        >  2:6962‑M2/34‑62 (MQ=255)                                                                                                                                                                attcaatatattgcagagttcacgtaggccGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTAt                                                                                                                                                                                       <  1:27433‑M2/78‑1 (MQ=255)                                                                                                                                                                 ttcaatatattgcagagttcacgtaggccGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAaca                                                                                                                                                                                                      <  1:649633‑M2/63‑1 (MQ=255)                                                                                                                                                                 tatctTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACtt                                                                                                                                                   <  1:607459/143‑1 (MQ=255)                                                                                                                                                                      tGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATATCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTGTGCGGGCGCGG‑TTGccagccagt         >  2:658810/1‑274 (MQ=255)                                                                                                                                                                        aaTTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCCTCTCCCCAGTAACCATCGTTTTCCGTATTTCCAACCAGGTTTTCGGGCGCGNCTTGCCAACAagtc        >  2:520705/1‑273 (MQ=255)                                                                                                                                                                          tttGAATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGa                                                                                                                                                                                                 <  1:285325/88‑1 (MQ=255)                                                                                                                                                                             gCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAAt                                                                                                                                                                                           >  2:441820/1‑91 (MQ=255)                                                                                                                                                                             gCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGt                                                                                                                                                                                   >  1:232421/1‑99 (MQ=255)                                                                                                                                                                             gCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAg                                                                                                                                                                    >  2:692363/1‑114 (MQ=255)                                                                                                                                                                             gCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAATGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCCGTAAGAATCGTTTTCCGTATGCTCAACCACTTTTCCAGGCGCGG‑TGGCCACCAAgcgctcccc  >  2:629465/1‑270 (MQ=255)                                                                                                                                                                                 gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTAt                                                                                                                                                                                       <  1:441827/91‑1 (MQ=255)                                                                                                                                                                                 gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTa                                                                                                                                                                               <  2:232416/99‑1 (MQ=255)                                                                                                                                                                                 gCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCAc                                                                                                                                                                <  1:692372/114‑1 (MQ=255)                                                                                                                                                                                             cGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCa                                                                                                                                                                 >  2:447552‑M2/2‑101 (MQ=255)                                                                                                                                                                                             cGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAg                                                                                                                                           >  2:7658‑M2/2‑123 (MQ=255)                                                                                                                                                                                              |                                                                                                                                                                                                                                                                   GATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGG‑TTGCCAGCAAGAGCGCACG  >  CP009273/827627‑828073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.