New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1098333	33 (0.860)	8 (0.220)	5/296	NT	20.0%	coding (320/651 nt)	csgD	csgBAC operon transcriptional regulator
	?	CP009273	= 1098666	33 (0.910)					intergenic (‑14/‑741)	csgD/csgB	csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex

TATAAAGATGCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAA  >  CP009273/1098076‑1098535                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                           tattAATATTCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTTAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGc                                                                                                                                                                                           <  1:589610/275‑1 (MQ=255)         tGCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGAGCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGNATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGCTCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTc                                                                                                                                                                                   >  1:551934/1‑275 (MQ=255)                        ttttCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCa                                                                                                                                                                                  >  1:571176/1‑261 (MQ=255)                        ttttCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTGTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCa                                                                                                                                                                                  <  2:571167/261‑1 (MQ=255)                                                gCGATCTGGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGca                                                                                                                                             <  1:593528/274‑1 (MQ=255)                                                                                                   tCCCGATGAGAAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaatc                                                                                                                                      >  1:713899‑M1/1‑160 (MQ=255)                                                                                                       gATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaatcttct                                                                                                                                  <  2:713889‑M1/230‑75 (MQ=255)                                                                                                       gATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGTCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAg                                                                                                         >  2:222819/1‑255 (MQ=255)                                                                                                           aGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATc                                                                                                     <  1:222824/255‑1 (MQ=255)                                                                                                                     gCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGtt                                                                                                                                                                                      >  2:659050/1‑164 (MQ=255)                                                                                                                         aTTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCATTTTTCa                                                                                                                                                                                  <  1:659059/164‑1 (MQ=255)                                                                                                                               tGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTTATATg                                                                                                                                                                                               >  1:611010/1‑145 (MQ=255)                                                                                                                                   gTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGc                                                                                                                                                                                           <  2:611001/145‑1 (MQ=255)                                                                                                                                     tgtaACGATAGATACCTGAAGGCGTAAGCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTGGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCat                                                        <  2:183449/272‑2 (MQ=255)                                                                                                                                        aaCGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACg                                                                                                                                                                                                          <  1:560872/125‑1 (MQ=255)                                                                                                                                                      gAATGCGTAATCAGGTAGCTGGCAAGCGTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGa                                      >  1:410752/1‑275 (MQ=255)                                                                                                                                                       aaTGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACACATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATACAGAAGAATAATAGAGCCGGaa                                     >  1:167855/1‑275 (MQ=255)                                                                                                                                                         tGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTg                                                                                                                                                                                                    >  2:210447/1‑114 (MQ=255)                                                                                                                                                             tAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGatat                                                                                                                                                                                                <  1:210451/114‑1 (MQ=255)                                                                                                                                                                 cAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaatc                                                                                                                                      >  2:576573‑M1/1‑98 (MQ=255)                                                                                                                                                                     tAGCTGGCAAGCTTTTGGGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcatacattatcgttgatcactaaatcttct                                                                                                                                  <  1:576582‑M1/168‑75 (MQ=255)                                                                                                                                                                       gCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAg                                                                                                         >  1:41567/1‑191 (MQ=255)                                                                                                                                                                           gCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATc                                                                                                     <  2:41567/191‑1 (MQ=255)                                                                                                                                                                                          aaGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACg                                                                                                                                                                     >  2:434850/1‑112 (MQ=255)                                                                                                                                                                                           aGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTACCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTaa  >  1:376406/1‑274 (MQ=255)                                                                                                                                                                                              aGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTa                                                                                                                                                                 <  1:434857/112‑1 (MQ=255)                                                                                                                                                                                                cATTCGCCGCGCAGGACGCCTCGTAACCGTTTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATg                                                                                                                                                                               >  1:495058/1‑96 (MQ=255)                                                                                                                                                                                                    cgccgcGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTcgc                                                                                                                                                                           <  2:495051/96‑1 (MQ=255)                                                                                                                                                                                                     gccgcGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGcc                                                                                                >  2:307081/1‑170 (MQ=255)                                                                                                                                                                                                         cgcAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCa                                                                                                                                                                                  >  1:703355/1‑84 (MQ=255)                                                                                                                                                                                                         cgcAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCaata                                                                                            <  1:307087/170‑1 (MQ=255)                                                                                                                                                                                                             ggACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGt                                                                                                                                                                              <  2:703346/84‑1 (MQ=255)                                                                                                                                                                                                                                    acacGTTCTTGATCCTCCATGGCATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcctaccttatttttgatcactaaatc                                                                                                                                      >  2:146905‑M1/1‑31 (MQ=255)                                                                                                                                                                                                                                    acacGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATg                                                                                         >  2:269797/1‑146 (MQ=255)                                                                                                                                                                                                                                      acGTTCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaatc                                                                                                                                      >  1:119637‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                        gTTCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagcccatagtattcatggtcatacattattgttgatcactaaatcttct                                                                                                                                  <  1:146906‑M1/101‑75 (MQ=255)                                                                                                                                                                                                                                        gTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATa                                                                                     <  1:269802/146‑1 (MQ=255)                                                                                                                                                                                                                                          tCTTGATCCTCCATGGAATAAAAAAagcggggtttcatcatgtttaatgaagtccatagtattcatggtcatacattattgttgatcactaaatcttct                                                                                                                                  <  2:119636‑M1/99‑75 (MQ=255)                                                                                                                                                                                                                                                     cATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTc                          >  1:707292/1‑192 (MQ=255)                                                                                                                                                                                                                                                      aTGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGATAATCTTCAGGCGTATTTAGCAACAATATTTTg                                                                                                                                  >  2:562095/1‑87 (MQ=255)                                                                                                                                                                                                                                                         gAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCaga                      <  2:707282/192‑1 (MQ=255)                                                                                                                                                                                                                                                          aaTAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCGTCGGGCGTATTTAGCAACAATATTTTGatat                                                                                                                              <  1:562104/87‑1 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                           TATAAAGATGCGTTTTAACCGTATTTTCGCTGATGAACAACGAACGAGCGATCTCGTTATTAGACGCGCCGATACGCAGCTTATTCAGGATCTCTTTTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTTCAATGTCGCGGTACGGGTAATCTTCAGGCGTATTTAGCAACAATATTTTGATATTGTTGTTTTTCCTGCTCAAAGTATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAA  >  CP009273/1098076‑1098535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.