New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1098333	33 (0.860)	8 (0.220)	5/296	NT	20.0%	coding (320/651 nt)	csgD	csgBAC operon transcriptional regulator
	?	CP009273	= 1098666	33 (0.910)					intergenic (‑14/‑741)	csgD/csgB	csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex

ATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTAAAATGTTAACCTTAAGGTTTTATTAAGTTTAGAAATGATAGAA  >  CP009273/1098434‑1098913                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                        aTCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAAGTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGa                                                                                                                                                                                                               <  1:138272/275‑1 (MQ=255)                 aTAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTa                                                                                                                                                                                                  >  1:26974/1‑272 (MQ=255)                           tataCGCTACCTNNAGATCCAGAAGNATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTTAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTg                                                                                                                                                                                     <  2:26974/275‑1 (MQ=255)                               cGCTTCCATCATATCCAGAAGAATAATAGAGCCGGAAGAGATATCGTCTAGAGAACGTTGATTATTATGTACTTTTCGTGTAATTGCAAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCAGCTTTTTTTATTGATAGAACACCTGACAGATGCCTATAAAATAAAAGAAACAGAAGTACTGACAGATGTTGCAct                                                                                                                                                                                 >  2:663080/1‑275 (MQ=255)                                   tCCATCATATCCAGAAGTATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTTAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGNGCTGTCGCCTTCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTAATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCa                                                                                                                                                                                   <  1:663089/269‑1 (MQ=255)                                                         taGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                                                                                                                                                              >  2:322252/1‑236 (MQ=255)                                                             gCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                                                                                                                                                                          <  1:322258/236‑1 (MQ=255)                                                              ccTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATAGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATg                                                                                                                                                  >  2:600183/1‑275 (MQ=255)                                                              ccTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAAT‑ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                                                                                                                                                                    >  1:222339/1‑224 (MQ=255)                                                              ccTGAAGAGATATAGCCCAGAGAGTGTTGAATATTGTGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGCGCTCTCGCCTGCACAGAAGATTTAGTGATCAACAATAATGAAGGACCATGAATACTAAGCACTTCATTAAACATTAAGAAACCCCGCTTTTTTTATTGAACGCACACCTGACCGCGGCCTCTAAACTAAAACCACCAGAAGTACTGACAGCTCTTGCACTGCTTTGGGTAGTAATAAACCAGCCCTaccta                                                                                                                                                  >  2:27377/1‑271 (MQ=255)                                                                  aaGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAAT‑ATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACt                                                                                                                                                                                                <  2:222334/224‑1 (MQ=255)                                                                                                                 aTTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATaaaa                                                                                                                                    >  1:341758/1‑238 (MQ=255)                                                                                                                                       gctgcAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGANACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGACATTACAAATCTTAAATCAAGTGTTaaa                                                                          <  1:523927/274‑1 (MQ=255)                                                                                                                                                                agaagaTTTAGTGATCAACGATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaagaacgtgttgtcaatgggttgcaaggcgtcctgcgcggcgaatgctactttacccaaaagcttgccagcta                                                                                                                                                           <  1:576582‑M2/168‑95 (MQ=255)                                                                                                                                                                agaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGGCTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaagaac                                                                                                                                                                                                                              <  1:146906‑M2/101‑28 (MQ=255)                                                                                                                                                                agaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaagaacgtgttgtcaatgggttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagctacctgattacgcattcaggtaactatcgttataacagcacggaatcagccctccttactcatc                                                                                             <  2:713889‑M2/230‑157 (MQ=255)                                                                                                                                                                agaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaaga                                                                                                                                                                                                                                <  2:119636‑M2/99‑26 (MQ=255)                                                                                                                                                                   aggtatAGTGAACAACAATAATCTATAACCCTGAATACTAGGGACTTCATGAAACATTCTGAAACCCCTCTTTTTTTATTACTCTCACACCAAACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACTGATGTTGCATTGCTGTGTGTAGTAATAAATCAGCCCTAAATCGGTAAAATATAAAACTAATGGATTACTTCTGATTTCAATCTAGCCATTACTAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTa                                             <  2:228242/270‑1 (MQ=255)                                                                                                                                                                    gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaagaacgtgttgtcaatgggttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagctacctgattacgcattcaggtaactatcgttataacagcacggaatcagccctcctttctcatcggga                                                                                         >  1:713899‑M2/1‑70 (MQ=255)                                                                                                                                                                    gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaagaacgtgttgtcaatgggttgcaaggcgtcctgcgcggcgaatgctactttacgcaaaagcttgccagctacctg                                                                                                                                                       >  2:576573‑M2/1‑70 (MQ=255)                                                                                                                                                                    gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttattccatggaggatcaagaacgt                                                                                                                                                                                                                            >  1:119637‑M2/1‑70 (MQ=255)                                                                                                                                                                    gaTTTAGTGATCAAAAATAAGGTAGGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTttttttatgccatggaggatcaagaacgtgt                                                                                                                                                                                                                          >  2:146905‑M2/1‑70 (MQ=255)                                                                                                                                                                       ttAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGCTGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTACTAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTCGCAATTAAAAAACTTAAATCAAGTCTTAAACATGTAACTAAATATAACTCCTAATATTAAAAt                                         >  1:228247/1‑275 (MQ=255)                                                                                                                                                                               caacaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGAttt                                                                                                               >  2:574336/1‑197 (MQ=255)                                                                                                                                                                                   aataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAAt                                                                                                           <  1:574345/197‑1 (MQ=255)                                                                                                                                                                                        tGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt                                                                                                                                                                                       >  2:587445/1‑116 (MQ=255)                                                                                                                                                                                            tGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAg                                                                                                                                                                                                                               >  1:224429/1‑72 (MQ=255)                                                                                                                                                                                            tGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCa                                                                                                                                                                                   <  1:587454/116‑1 (MQ=255)                                                                                                                                                                                               ccATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgt                                                                                                                                                                            >  2:132133/1‑120 (MQ=255)                                                                                                                                                                                               ccATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat                                                                                                                                                                  >  1:253904/1‑130 (MQ=255)                                                                                                                                                                                                cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGc                                                                                                                                                                                                                           <  2:224424/72‑1 (MQ=255)                                                                                                                                                                                                  tGAATACTATTGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaat                                                                                                                                                                  >  2:555518/1‑127 (MQ=255)                                                                                                                                                                                                  tGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGAtt                                                                                                                          >  2:693885/1‑167 (MQ=255)                                                                                                                                                                                                   gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTTACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                                                                                                                                                              <  2:253899/130‑1 (MQ=255)                                                                                                                                                                                                   gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTgtgtgt                                                                                                                                                                        <  1:132134/120‑1 (MQ=255)                                                                                                                                                                                                      tACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                                                                                                                                                              <  1:555527/127‑1 (MQ=255)                                                                                                                                                                                                      tACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACAt                                                                                                                      <  1:693894/167‑1 (MQ=255)                                                                                                                                                                                                              aCTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTATAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTAAAATGTTAACCTTAAGGTTTTATTAAGTTTAGAAATGATAGaa  <  1:27377/275‑1 (MQ=255)                                                                                                                                                                                                                            gatgaAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgt                                                                                                                                                                            >  2:475046/1‑91 (MQ=255)                                                                                                                                                                                                                                aaaCCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTCCTGACAGATGTTGCACTGCTgtgtgt                                                                                                                                                                        <  1:475053/91‑1 (MQ=255)                                                                                                                                                                                                                                 aaCCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCGAAATGGGTAAAATATAAAACTAATAGAGTACATCTGATTTCAATCTAGCCATTACAAAt                                                                                            <  1:470351/166‑1 (MQ=255)                                                                                                                                                                                                                                        cTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGc                                                                                                                                                                                    >  2:630071/1‑71 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                        ATCCTGCCAATAATGGATAAGCTTTTTATCCGCTTCCATCATATCCAGAAGAATAATAGAGCCTGAAGAGATATCGTCCAGAGAACGTTGAATATTATGTAATTTTCCTGTAATTGCCAGCGATTGTTTAAGGTGCTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTAAAATGTTAACCTTAAGGTTTTATTAAGTTTAGAAATGATAGAA  >  CP009273/1098434‑1098913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.