New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1158375 =	9 (0.230)	5 (0.140)	5/300	NT	28.9%	coding (282/642 nt)	lpoB	OM lipoprotein stimulator of MrcB transpeptidase
	?	CP009273	1158792 =	16 (0.440)					coding (77/825 nt)	thiK	thiamine kinase

CCCACAGTGCCCTCGGTGCCGACGATCCCGCAGCAGCCAGGCCCAATTGAGCACGAAGATCAAACTGCACCGCCTGCGCCGCATATTCGCCATTATGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGCACCCGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACG  >  CP009273/1158232‑1158619                                                                                                                                                |                                                                                                                                                                                                                                                     tgcgggtagttgtgataaagcccgatactggcgcaagaacgcggactgcggcgcatcaggatcgtgcggctgacgcacaacaaaacgctggacctgatgttcaatgagaaaactcccgccactaagcccactattaaacgacgTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTGCTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGATGGCTAATAACGGGAAATTAACCCtgga                                                                                                                   <  1:692377‑M1/132‑2 (MQ=255)                           cccGCAGCAGCCAGGCCCAATTGAGCACGAAGATCAAACTGCACCGCCTGCGCCGCATATTCGCCATTATGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGCAGCGACCGAAACGCTGCGAAAAGCGATCGATAAAAAAGGGAAAAGTACCATGGTTGCCGCCCAGCAACTGTCGATGGCgg                                                                                         >  2:170960/1‑274 (MQ=255)                                                                             cgccgcATATGCGCCATTATGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGCACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAAGGCGCTGGCTAATAACGGGAAATTTACCCTGGGTTACGCCCAGCAACGGTCGATgg                                                                                            <  1:21933/222‑1 (MQ=255)                                                                                        cGCCATTATGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTTGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGCACCCGTAGTAAAGCCATAGGCAt                            <  1:170963/275‑1 (MQ=255)                                                                                         tggccctgatgttcaatgagaaaactcccgccactaagcccactattaaacgtcgTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGa                                                                                                                                                                <  2:550340‑M1/87‑1 (MQ=255)                                                                                           gccctgatgttcaatgagaaaactcccgccactaagcccactattaaacgtcgTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGt                                                                           <  2:161519‑M1/172‑1 (MQ=255)                                                                                            aTTATGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGaaa                                                                                                                                                    >  1:59979/1‑151 (MQ=255)                                                                                             cctgatgttcaatgagaaaactcccgccactaagcccactattaaacgtcgTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACg                                                                                                                                                            >  1:550349‑M1/52‑142 (MQ=255)                                                                                               tgatgttcaatgagaaaactcccgccactaagcccactattaaacgtcgTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGTTTGt                                                                       >  1:161522‑M1/50‑225 (MQ=255)                                                                                                tGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATgcg                                                                                                                                                <  2:59978/151‑1 (MQ=255)                                                                                                                  gCAGCGGATGGGCAGTAAGATGCTTGGGGCGGACGGTGTGACTGCGTGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGNAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGCACCCGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACg  <  1:659716/275‑1 (MQ=255)                                                                                                                   cAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGGGGGTAGCTGCCTGCTGGTTGATTGCGTTAACAACCGTACTAACGGTTCGCTGGATGCCGCAGGAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGCACCCGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACg  <  1:382461/274‑1 (MQ=255)                                                                                                                                gTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAg                                                                                                                                                                                                                >  2:534926/1‑55 (MQ=255)                                                                                                                                    gATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGtt                                                                                                                                                                                                            <  1:534934/55‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                                                                                                                     CCCACAGTGCCCTCGGTGCCGACGATCCCGCAGCAGCCAGGCCCAATTGAGCACGAAGATCAAACTGCACCGCCTGCGCCGCATATTCGCCATTATGACTGGAATGGCGCAATGCAGCCGATGGTCAGTAAGATGCTTGGGGCTGACGGGGTGACTGCGGGTAGCGTCCTGCTGGTTGATAGCGTTAACAACCGTACTAACGGTTCGCTGAATGCCGCAGAAGCGACCGAAACGCTGCGAAATGCGCTGGCTAATAACGGGAAATTTACCCTGGTTTCCGCCCAGCAACTGTCGATGGCGAAGCAACAGTTAGGTTTGTCGCCGCAGGACAGTTTAGGCACCCGTAGTAAAGCCATAGGCATTGCCCGCAATGTCGGCGCTCATTACG  >  CP009273/1158232‑1158619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.